miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 142121 0.66 0.733534
Target:  5'- uCUGCGacCCGgcggCCGACcGCCgggucacggcggagGCGGCg -3'
miRNA:   3'- -GACGCacGGCa---GGCUGcCGGa-------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 185769 0.66 0.729847
Target:  5'- -cGCG-GCCGcCCGucacacguCGGCCggcGCGGg -3'
miRNA:   3'- gaCGCaCGGCaGGCu-------GCCGGa--CGCCg -5'
10970 3' -62.2 NC_002794.1 + 113322 0.66 0.729847
Target:  5'- -cGCcggGCCGUCagguagcggaCGugGGCCUGUucguaaGGCg -3'
miRNA:   3'- gaCGca-CGGCAG----------GCugCCGGACG------CCG- -5'
10970 3' -62.2 NC_002794.1 + 126266 0.66 0.729847
Target:  5'- -gGCG-GCUGgCUGGCGGCgCUG-GGCu -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCG-GACgCCG- -5'
10970 3' -62.2 NC_002794.1 + 100789 0.66 0.729847
Target:  5'- cCUGCGguucgcgGCCGcuUCUGcgccuACGuGCCggGCGGCg -3'
miRNA:   3'- -GACGCa------CGGC--AGGC-----UGC-CGGa-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 63996 0.66 0.720579
Target:  5'- -aGCGggcuCCGUCUG--GGuCCUGCGGCu -3'
miRNA:   3'- gaCGCac--GGCAGGCugCC-GGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 152421 0.66 0.729847
Target:  5'- gCUGCcccggGCCGUCUGuCGGCagCUG-GGCu -3'
miRNA:   3'- -GACGca---CGGCAGGCuGCCG--GACgCCG- -5'
10970 3' -62.2 NC_002794.1 + 192022 0.66 0.720579
Target:  5'- -cGCGgcUGCUGUUucugUGGCGGCg-GCGGCu -3'
miRNA:   3'- gaCGC--ACGGCAG----GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 141305 0.66 0.720579
Target:  5'- -gGCGcGCCGg-CGACGGCac-CGGCg -3'
miRNA:   3'- gaCGCaCGGCagGCUGCCGgacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 82058 0.66 0.729847
Target:  5'- -gGCGgcGUCGUCCu-CGGCCUcGcCGGCc -3'
miRNA:   3'- gaCGCa-CGGCAGGcuGCCGGA-C-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 75374 0.66 0.729847
Target:  5'- -----cGCCGcggCCGGCGGCg-GCGGCc -3'
miRNA:   3'- gacgcaCGGCa--GGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 101821 0.67 0.673385
Target:  5'- -gGCGcGCCGUgCGcgaGGCCaUGCGGg -3'
miRNA:   3'- gaCGCaCGGCAgGCug-CCGG-ACGCCg -5'
10970 3' -62.2 NC_002794.1 + 183558 0.67 0.673385
Target:  5'- aCUGCGcGCCGagccgCCGACacgGGCCUuuaauacggugGgGGCg -3'
miRNA:   3'- -GACGCaCGGCa----GGCUG---CCGGA-----------CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 133501 0.67 0.673385
Target:  5'- -gGCGacCCGUCCGACGGCgaccUGGCc -3'
miRNA:   3'- gaCGCacGGCAGGCUGCCGgac-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 105516 0.67 0.6772
Target:  5'- -gGuCGcGCCGUCCGAagcggacgugagaucCGGCg-GCGGCu -3'
miRNA:   3'- gaC-GCaCGGCAGGCU---------------GCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 103777 0.67 0.682913
Target:  5'- -gGCGUGCaucUCCGGCGGCUgagcuugaggUGCGccuGCg -3'
miRNA:   3'- gaCGCACGgc-AGGCUGCCGG----------ACGC---CG- -5'
10970 3' -62.2 NC_002794.1 + 95002 0.67 0.682913
Target:  5'- -cGCuUGCUGUCgcugauggGGCGGCUgUGCGGCa -3'
miRNA:   3'- gaCGcACGGCAGg-------CUGCCGG-ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 176727 0.67 0.682913
Target:  5'- -gGCGU-CUGgagaugcgacCUGugGGUCUGCGGCa -3'
miRNA:   3'- gaCGCAcGGCa---------GGCugCCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 116682 0.67 0.682913
Target:  5'- -aGCGUGUCGaUCCGGgagcCGGCCUcCaGCa -3'
miRNA:   3'- gaCGCACGGC-AGGCU----GCCGGAcGcCG- -5'
10970 3' -62.2 NC_002794.1 + 26086 0.67 0.673385
Target:  5'- -cGCGggGCagcgCCGACGGCCc-CGGCg -3'
miRNA:   3'- gaCGCa-CGgca-GGCUGCCGGacGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.