Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10970 | 3' | -62.2 | NC_002794.1 | + | 184598 | 0.67 | 0.644654 |
Target: 5'- -cGCG-GCCGcgggaUCgGcaACGGCCaGCGGCa -3' miRNA: 3'- gaCGCaCGGC-----AGgC--UGCCGGaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 152583 | 0.67 | 0.644654 |
Target: 5'- -cGCGgcgGCCG-CC-ACGucCCUGCGGCg -3' miRNA: 3'- gaCGCa--CGGCaGGcUGCc-GGACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 98964 | 0.67 | 0.644654 |
Target: 5'- gCUGgGcGCCGU-CGGCGGCgCcGUGGCc -3' miRNA: 3'- -GACgCaCGGCAgGCUGCCG-GaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 62119 | 0.67 | 0.644654 |
Target: 5'- gUGCGUGUCGagCGACcGCCa-CGGCg -3' miRNA: 3'- gACGCACGGCagGCUGcCGGacGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 91494 | 0.67 | 0.644654 |
Target: 5'- gCUGU-UGCUGUgCGACGccaucGCCUGCGaGCu -3' miRNA: 3'- -GACGcACGGCAgGCUGC-----CGGACGC-CG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 154342 | 0.67 | 0.670521 |
Target: 5'- -cGgGUGCCGcggCCGAgcucccgcgcggucCaGGCCgcgGCGGCg -3' miRNA: 3'- gaCgCACGGCa--GGCU--------------G-CCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 13956 | 0.67 | 0.673385 |
Target: 5'- gUGCGUGUCGagCCGcuCGGagacguucgCUGCGGCc -3' miRNA: 3'- gACGCACGGCa-GGCu-GCCg--------GACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 116682 | 0.67 | 0.682913 |
Target: 5'- -aGCGUGUCGaUCCGGgagcCGGCCUcCaGCa -3' miRNA: 3'- gaCGCACGGC-AGGCU----GCCGGAcGcCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 176727 | 0.67 | 0.682913 |
Target: 5'- -gGCGU-CUGgagaugcgacCUGugGGUCUGCGGCa -3' miRNA: 3'- gaCGCAcGGCa---------GGCugCCGGACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 95002 | 0.67 | 0.682913 |
Target: 5'- -cGCuUGCUGUCgcugauggGGCGGCUgUGCGGCa -3' miRNA: 3'- gaCGcACGGCAGg-------CUGCCGG-ACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 103777 | 0.67 | 0.682913 |
Target: 5'- -gGCGUGCaucUCCGGCGGCUgagcuugaggUGCGccuGCg -3' miRNA: 3'- gaCGCACGgc-AGGCUGCCGG----------ACGC---CG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 105516 | 0.67 | 0.6772 |
Target: 5'- -gGuCGcGCCGUCCGAagcggacgugagaucCGGCg-GCGGCu -3' miRNA: 3'- gaC-GCaCGGCAGGCU---------------GCCGgaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 183558 | 0.67 | 0.673385 |
Target: 5'- aCUGCGcGCCGagccgCCGACacgGGCCUuuaauacggugGgGGCg -3' miRNA: 3'- -GACGCaCGGCa----GGCUG---CCGGA-----------CgCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 101821 | 0.67 | 0.673385 |
Target: 5'- -gGCGcGCCGUgCGcgaGGCCaUGCGGg -3' miRNA: 3'- gaCGCaCGGCAgGCug-CCGG-ACGCCg -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 26086 | 0.67 | 0.673385 |
Target: 5'- -cGCGggGCagcgCCGACGGCCc-CGGCg -3' miRNA: 3'- gaCGCa-CGgca-GGCUGCCGGacGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 61143 | 0.67 | 0.673385 |
Target: 5'- cCUGC-UGCCGcCCGaccccgagcgcGCGGuCCggaucgGCGGCu -3' miRNA: 3'- -GACGcACGGCaGGC-----------UGCC-GGa-----CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 71097 | 0.67 | 0.673385 |
Target: 5'- -----aGCCGgucgCCGGCGGCCUGgccggagaGGCg -3' miRNA: 3'- gacgcaCGGCa---GGCUGCCGGACg-------CCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 15219 | 0.67 | 0.673385 |
Target: 5'- -gGCGUcccCCGUCCG-CGGgCUGcCGGUc -3' miRNA: 3'- gaCGCAc--GGCAGGCuGCCgGAC-GCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 133738 | 0.67 | 0.673385 |
Target: 5'- uCUGC-UGCCGUUCGGucGCCUGCaGGg -3' miRNA: 3'- -GACGcACGGCAGGCUgcCGGACG-CCg -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 133501 | 0.67 | 0.673385 |
Target: 5'- -gGCGacCCGUCCGACGGCgaccUGGCc -3' miRNA: 3'- gaCGCacGGCAGGCUGCCGgac-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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