Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10970 | 3' | -62.2 | NC_002794.1 | + | 115307 | 0.82 | 0.087194 |
Target: 5'- gCUGCGccGCCGUCCGcACGGUCgccGCGGCg -3' miRNA: 3'- -GACGCa-CGGCAGGC-UGCCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 107511 | 0.81 | 0.096316 |
Target: 5'- -gGgGUGCCGgucgacgCCGACGGCCggcGCGGCg -3' miRNA: 3'- gaCgCACGGCa------GGCUGCCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 143573 | 0.79 | 0.146037 |
Target: 5'- gUGCGcGCCGUCCucGGCGGCgCUGUGGUc -3' miRNA: 3'- gACGCaCGGCAGG--CUGCCG-GACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 106825 | 0.79 | 0.146037 |
Target: 5'- uUGCGU--CGUCCGGCgcucGGCCUGCGGCu -3' miRNA: 3'- gACGCAcgGCAGGCUG----CCGGACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 59024 | 0.78 | 0.17021 |
Target: 5'- aCUGCGUGCUGcCCG-CGcucaccaacaaccgcGCCUGCGGCc -3' miRNA: 3'- -GACGCACGGCaGGCuGC---------------CGGACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 100143 | 0.78 | 0.153234 |
Target: 5'- -cGCG-GCCGUucgCCGACcuguaccugguGGCCUGCGGCa -3' miRNA: 3'- gaCGCaCGGCA---GGCUG-----------CCGGACGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 137593 | 0.78 | 0.1686 |
Target: 5'- gUGCGgggaGCCGccgCCGGCGGUCgcgGCGGCg -3' miRNA: 3'- gACGCa---CGGCa--GGCUGCCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 112336 | 0.77 | 0.203509 |
Target: 5'- -aGCGcGCCGgCCGGCGGCgCcgGCGGCg -3' miRNA: 3'- gaCGCaCGGCaGGCUGCCG-Ga-CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 56141 | 0.76 | 0.223215 |
Target: 5'- -aGCGUGUCGUaCGGCGuGCCgcaGCGGCa -3' miRNA: 3'- gaCGCACGGCAgGCUGC-CGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 86970 | 0.75 | 0.261586 |
Target: 5'- gCUGCGgcgaGCUgcgacgagGUCCGGCGGCUuucgGCGGCg -3' miRNA: 3'- -GACGCa---CGG--------CAGGCUGCCGGa---CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 125744 | 0.75 | 0.261586 |
Target: 5'- -gGCGgGCCGcgggaCGGCGGCCgGCGGCu -3' miRNA: 3'- gaCGCaCGGCag---GCUGCCGGaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 80429 | 0.75 | 0.260419 |
Target: 5'- -gGCGggGCCGccgCCGGCGGCCgccggcccgucgGCGGCc -3' miRNA: 3'- gaCGCa-CGGCa--GGCUGCCGGa-----------CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 29203 | 0.75 | 0.250103 |
Target: 5'- --cCGU-CCGUCCGGCGGUCgGCGGCc -3' miRNA: 3'- gacGCAcGGCAGGCUGCCGGaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 32860 | 0.74 | 0.279609 |
Target: 5'- -aGCG-GCCGagCCGGCGGgCgGCGGCg -3' miRNA: 3'- gaCGCaCGGCa-GGCUGCCgGaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 49396 | 0.73 | 0.325468 |
Target: 5'- -cGCc-GCCGUCggccaCGGCGGCCgcgGCGGCg -3' miRNA: 3'- gaCGcaCGGCAG-----GCUGCCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 156400 | 0.73 | 0.325468 |
Target: 5'- -aGCG-GCCGgcgCCG-CGGCC-GCGGCc -3' miRNA: 3'- gaCGCaCGGCa--GGCuGCCGGaCGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 148299 | 0.73 | 0.325468 |
Target: 5'- -cGaCGUGCUGUacgaccCCGACGGCCgaccGCGGUu -3' miRNA: 3'- gaC-GCACGGCA------GGCUGCCGGa---CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 70853 | 0.73 | 0.325468 |
Target: 5'- -cGaCGUGCCGgccuccUCCGGCGGCggcaGCGGCg -3' miRNA: 3'- gaC-GCACGGC------AGGCUGCCGga--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 180735 | 0.73 | 0.318588 |
Target: 5'- -cGCGgacgacGCCGUCCGgcuccucgGCGGCUucgGCGGCa -3' miRNA: 3'- gaCGCa-----CGGCAGGC--------UGCCGGa--CGCCG- -5' |
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10970 | 3' | -62.2 | NC_002794.1 | + | 126088 | 0.73 | 0.339558 |
Target: 5'- cCUGCG-GCCGaCCGACuGGCUUcCGGCc -3' miRNA: 3'- -GACGCaCGGCaGGCUG-CCGGAcGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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