miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 115307 0.82 0.087194
Target:  5'- gCUGCGccGCCGUCCGcACGGUCgccGCGGCg -3'
miRNA:   3'- -GACGCa-CGGCAGGC-UGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 107511 0.81 0.096316
Target:  5'- -gGgGUGCCGgucgacgCCGACGGCCggcGCGGCg -3'
miRNA:   3'- gaCgCACGGCa------GGCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 143573 0.79 0.146037
Target:  5'- gUGCGcGCCGUCCucGGCGGCgCUGUGGUc -3'
miRNA:   3'- gACGCaCGGCAGG--CUGCCG-GACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 106825 0.79 0.146037
Target:  5'- uUGCGU--CGUCCGGCgcucGGCCUGCGGCu -3'
miRNA:   3'- gACGCAcgGCAGGCUG----CCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 100143 0.78 0.153234
Target:  5'- -cGCG-GCCGUucgCCGACcuguaccugguGGCCUGCGGCa -3'
miRNA:   3'- gaCGCaCGGCA---GGCUG-----------CCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 137593 0.78 0.1686
Target:  5'- gUGCGgggaGCCGccgCCGGCGGUCgcgGCGGCg -3'
miRNA:   3'- gACGCa---CGGCa--GGCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 59024 0.78 0.17021
Target:  5'- aCUGCGUGCUGcCCG-CGcucaccaacaaccgcGCCUGCGGCc -3'
miRNA:   3'- -GACGCACGGCaGGCuGC---------------CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 112336 0.77 0.203509
Target:  5'- -aGCGcGCCGgCCGGCGGCgCcgGCGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCG-Ga-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 56141 0.76 0.223215
Target:  5'- -aGCGUGUCGUaCGGCGuGCCgcaGCGGCa -3'
miRNA:   3'- gaCGCACGGCAgGCUGC-CGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 29203 0.75 0.250103
Target:  5'- --cCGU-CCGUCCGGCGGUCgGCGGCc -3'
miRNA:   3'- gacGCAcGGCAGGCUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 80429 0.75 0.260419
Target:  5'- -gGCGggGCCGccgCCGGCGGCCgccggcccgucgGCGGCc -3'
miRNA:   3'- gaCGCa-CGGCa--GGCUGCCGGa-----------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 86970 0.75 0.261586
Target:  5'- gCUGCGgcgaGCUgcgacgagGUCCGGCGGCUuucgGCGGCg -3'
miRNA:   3'- -GACGCa---CGG--------CAGGCUGCCGGa---CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 125744 0.75 0.261586
Target:  5'- -gGCGgGCCGcgggaCGGCGGCCgGCGGCu -3'
miRNA:   3'- gaCGCaCGGCag---GCUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 32860 0.74 0.279609
Target:  5'- -aGCG-GCCGagCCGGCGGgCgGCGGCg -3'
miRNA:   3'- gaCGCaCGGCa-GGCUGCCgGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 180735 0.73 0.318588
Target:  5'- -cGCGgacgacGCCGUCCGgcuccucgGCGGCUucgGCGGCa -3'
miRNA:   3'- gaCGCa-----CGGCAGGC--------UGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 70853 0.73 0.325468
Target:  5'- -cGaCGUGCCGgccuccUCCGGCGGCggcaGCGGCg -3'
miRNA:   3'- gaC-GCACGGC------AGGCUGCCGga--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 49396 0.73 0.325468
Target:  5'- -cGCc-GCCGUCggccaCGGCGGCCgcgGCGGCg -3'
miRNA:   3'- gaCGcaCGGCAG-----GCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 156400 0.73 0.325468
Target:  5'- -aGCG-GCCGgcgCCG-CGGCC-GCGGCc -3'
miRNA:   3'- gaCGCaCGGCa--GGCuGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 148299 0.73 0.325468
Target:  5'- -cGaCGUGCUGUacgaccCCGACGGCCgaccGCGGUu -3'
miRNA:   3'- gaC-GCACGGCA------GGCUGCCGGa---CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 115060 0.73 0.332458
Target:  5'- -gGCGgcagcGCCGUCCaguccACGGCCUcgGCGGCc -3'
miRNA:   3'- gaCGCa----CGGCAGGc----UGCCGGA--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.