miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 126088 0.73 0.339558
Target:  5'- cCUGCG-GCCGaCCGACuGGCUUcCGGCc -3'
miRNA:   3'- -GACGCaCGGCaGGCUG-CCGGAcGCCG- -5'
10970 3' -62.2 NC_002794.1 + 37737 0.73 0.346766
Target:  5'- -gGCGgcGCCG-CCGGCGGCggcGCGGCg -3'
miRNA:   3'- gaCGCa-CGGCaGGCUGCCGga-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 71369 0.72 0.353347
Target:  5'- gUGCGgcaGCCGccccaggaccuccUCC-ACGGUCUGCGGCu -3'
miRNA:   3'- gACGCa--CGGC-------------AGGcUGCCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 87354 0.72 0.354084
Target:  5'- -aGCGg---GUCCGGCGGCgaGCGGCg -3'
miRNA:   3'- gaCGCacggCAGGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 799 0.72 0.36151
Target:  5'- --cCGUGCCGUCCgGGCGGUCgggagGgGGCc -3'
miRNA:   3'- gacGCACGGCAGG-CUGCCGGa----CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 609 0.72 0.36151
Target:  5'- -cGgGUGCgGUCaGGCGGCCcggUGUGGCg -3'
miRNA:   3'- gaCgCACGgCAGgCUGCCGG---ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 119697 0.72 0.369044
Target:  5'- -gGC-UGCUGggCCGGCGGCCacaacgGCGGCu -3'
miRNA:   3'- gaCGcACGGCa-GGCUGCCGGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 48600 0.72 0.384431
Target:  5'- -cGCGUcGCCGUCgGcguCGGCCUcagacgcggaGCGGCc -3'
miRNA:   3'- gaCGCA-CGGCAGgCu--GCCGGA----------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 41246 0.72 0.384431
Target:  5'- -cGCG-GCCG-CCGAC-GCCgGCGGCc -3'
miRNA:   3'- gaCGCaCGGCaGGCUGcCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 12211 0.72 0.384431
Target:  5'- -gGaCGUGCCGgcggcgUCGGCGGCgCcgGCGGCg -3'
miRNA:   3'- gaC-GCACGGCa-----GGCUGCCG-Ga-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 61823 0.72 0.392282
Target:  5'- -gGCG-GCCG-CCGGCGGCCgGCGuCa -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCGGaCGCcG- -5'
10970 3' -62.2 NC_002794.1 + 192239 0.72 0.400238
Target:  5'- -gGCGcUGCCGUcgCCGACGGC--GCGGUu -3'
miRNA:   3'- gaCGC-ACGGCA--GGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 108205 0.72 0.400238
Target:  5'- gCUGCGccGCCGcgCCGgccucGCGcCCUGCGGCa -3'
miRNA:   3'- -GACGCa-CGGCa-GGC-----UGCcGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 93996 0.72 0.400238
Target:  5'- -cGCGgacGCCGgcgCCGGCGGCggGcCGGCg -3'
miRNA:   3'- gaCGCa--CGGCa--GGCUGCCGgaC-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 122996 0.71 0.408295
Target:  5'- gUGCGgGCCGUgCUGACgGGCCgGCuGGCc -3'
miRNA:   3'- gACGCaCGGCA-GGCUG-CCGGaCG-CCG- -5'
10970 3' -62.2 NC_002794.1 + 58042 0.71 0.408295
Target:  5'- -cGCGccGcCCGUCCccgucGGCGGCCccgGCGGCg -3'
miRNA:   3'- gaCGCa-C-GGCAGG-----CUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 48050 0.71 0.416452
Target:  5'- gUGCGUGCUGggcacggcgCUGAUGGCCggccaGCGGg -3'
miRNA:   3'- gACGCACGGCa--------GGCUGCCGGa----CGCCg -5'
10970 3' -62.2 NC_002794.1 + 114822 0.71 0.424709
Target:  5'- -cGCGcGCUcUCCGGCGGCCgaguCGGCu -3'
miRNA:   3'- gaCGCaCGGcAGGCUGCCGGac--GCCG- -5'
10970 3' -62.2 NC_002794.1 + 66845 0.71 0.424709
Target:  5'- -gGCGccGCCGUCgGcgcggcgaggccGCGGCgUGCGGCu -3'
miRNA:   3'- gaCGCa-CGGCAGgC------------UGCCGgACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 62050 0.71 0.424709
Target:  5'- cCUGuCGgugGCCGacgCCGGCGGCgacgccgGCGGCg -3'
miRNA:   3'- -GAC-GCa--CGGCa--GGCUGCCGga-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.