miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 55385 0.71 0.424709
Target:  5'- -gGCG-GCCGa--GGCGGCCgagGCGGCc -3'
miRNA:   3'- gaCGCaCGGCaggCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 114822 0.71 0.424709
Target:  5'- -cGCGcGCUcUCCGGCGGCCgaguCGGCu -3'
miRNA:   3'- gaCGCaCGGcAGGCUGCCGGac--GCCG- -5'
10970 3' -62.2 NC_002794.1 + 188344 0.71 0.424709
Target:  5'- -gGCGgcGCCGUCgCGcccgucCGGCCgGCGGCg -3'
miRNA:   3'- gaCGCa-CGGCAG-GCu-----GCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 104400 0.71 0.424709
Target:  5'- -gGUG-GUCGUCCGccGCGGCCU-CGGCc -3'
miRNA:   3'- gaCGCaCGGCAGGC--UGCCGGAcGCCG- -5'
10970 3' -62.2 NC_002794.1 + 61524 0.71 0.433062
Target:  5'- -gGCG-GCCG-CCGGCGGCC-GCcGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCGGaCGcCG- -5'
10970 3' -62.2 NC_002794.1 + 116891 0.71 0.433062
Target:  5'- -gGCGccggcGCCGucUCCGGCGGCCggucCGGCg -3'
miRNA:   3'- gaCGCa----CGGC--AGGCUGCCGGac--GCCG- -5'
10970 3' -62.2 NC_002794.1 + 42651 0.71 0.450052
Target:  5'- -cGCG-GCCGaagCCGACGGCgCcGcCGGCa -3'
miRNA:   3'- gaCGCaCGGCa--GGCUGCCG-GaC-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 106978 0.7 0.458683
Target:  5'- -cGCGgcgGCCGgcaCGGCGGUg-GCGGCg -3'
miRNA:   3'- gaCGCa--CGGCag-GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 84439 0.7 0.458683
Target:  5'- -cGaCGUGCCGaaCGAgGGCCUGCcGCc -3'
miRNA:   3'- gaC-GCACGGCagGCUgCCGGACGcCG- -5'
10970 3' -62.2 NC_002794.1 + 192143 0.7 0.467401
Target:  5'- gCUGC-UGCCGgcgcggUCgCGGCGgaGCCUGCGGUa -3'
miRNA:   3'- -GACGcACGGC------AG-GCUGC--CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 83018 0.7 0.476205
Target:  5'- uCUGCGccCCGUcCCGGC-GCCggGCGGCa -3'
miRNA:   3'- -GACGCacGGCA-GGCUGcCGGa-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 50626 0.7 0.476205
Target:  5'- gCUGCuUGcCCGUCCGGCGGUC-GCGa- -3'
miRNA:   3'- -GACGcAC-GGCAGGCUGCCGGaCGCcg -5'
10970 3' -62.2 NC_002794.1 + 95766 0.7 0.483306
Target:  5'- -gGCGgcgGCCGcgaCGGCGGCCggggcgagaggcGCGGCg -3'
miRNA:   3'- gaCGCa--CGGCag-GCUGCCGGa-----------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 84763 0.7 0.48509
Target:  5'- -cGCGagaggGCCGUCCGAggccCGGCC--CGGCu -3'
miRNA:   3'- gaCGCa----CGGCAGGCU----GCCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 141782 0.7 0.48509
Target:  5'- -cGaCGaGCCGUCCGACGGgC-GCGGg -3'
miRNA:   3'- gaC-GCaCGGCAGGCUGCCgGaCGCCg -5'
10970 3' -62.2 NC_002794.1 + 129168 0.7 0.48509
Target:  5'- -cGCGgccgaugGCCGUUCGAuCGGCCUcCGGg -3'
miRNA:   3'- gaCGCa------CGGCAGGCU-GCCGGAcGCCg -5'
10970 3' -62.2 NC_002794.1 + 63648 0.7 0.48509
Target:  5'- uCUGCGUGaccgccaaCGUCuCGgacgacgagcGCGGCC-GCGGCg -3'
miRNA:   3'- -GACGCACg-------GCAG-GC----------UGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 91259 0.7 0.493153
Target:  5'- -cGCGgacGCCGUUCGuggaccggcGCGGCCUGUacgugucGGCg -3'
miRNA:   3'- gaCGCa--CGGCAGGC---------UGCCGGACG-------CCG- -5'
10970 3' -62.2 NC_002794.1 + 19249 0.7 0.494053
Target:  5'- aUGaUGUGCCGaCCGgccGCGGCCcccGUGGCg -3'
miRNA:   3'- gAC-GCACGGCaGGC---UGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 38440 0.7 0.494053
Target:  5'- -gGCGgGCCGgacugaggagCCGgcGCGGCC-GCGGCg -3'
miRNA:   3'- gaCGCaCGGCa---------GGC--UGCCGGaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.