miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 18682 0.66 0.701849
Target:  5'- gCUGCcgccGCCGucUCCGgcACGGCg-GCGGCg -3'
miRNA:   3'- -GACGca--CGGC--AGGC--UGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 55299 0.66 0.701849
Target:  5'- -gGCGgcgGCggCGUCgCGGCGGgCgcggGCGGCu -3'
miRNA:   3'- gaCGCa--CG--GCAG-GCUGCCgGa---CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 112270 0.66 0.701849
Target:  5'- -gGCGUcUCGUCCu-CGGCCUccgugucggGCGGCc -3'
miRNA:   3'- gaCGCAcGGCAGGcuGCCGGA---------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 129026 0.66 0.701849
Target:  5'- -cGCc-GCCGUCuCGGCGaacuGUCUGCGGUc -3'
miRNA:   3'- gaCGcaCGGCAG-GCUGC----CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 107311 0.66 0.701849
Target:  5'- -cGCGggggcGCCGUCCGcGCGGUU--CGGCu -3'
miRNA:   3'- gaCGCa----CGGCAGGC-UGCCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 151590 0.66 0.701849
Target:  5'- -cGCGcGCCG-CCGccGCgGGCCcGCGGUu -3'
miRNA:   3'- gaCGCaCGGCaGGC--UG-CCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 82895 0.66 0.700907
Target:  5'- -cGCGUccgccucGCCGUCCGccucGCGGCCccGCcGCc -3'
miRNA:   3'- gaCGCA-------CGGCAGGC----UGCCGGa-CGcCG- -5'
10970 3' -62.2 NC_002794.1 + 95865 0.66 0.69902
Target:  5'- -gGCGgGCCGUuucaguguggcgacCCGGCGGCgaG-GGCg -3'
miRNA:   3'- gaCGCaCGGCA--------------GGCUGCCGgaCgCCG- -5'
10970 3' -62.2 NC_002794.1 + 116360 0.66 0.692403
Target:  5'- -gGcCGcGCgGUCCGAcCGGUCgGUGGCg -3'
miRNA:   3'- gaC-GCaCGgCAGGCU-GCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 36892 0.66 0.692403
Target:  5'- -cGCGUGCagagCGUCCaGA-GGUC-GCGGCg -3'
miRNA:   3'- gaCGCACG----GCAGG-CUgCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 120032 0.66 0.692403
Target:  5'- -cGCGgggacGUCGUCaUGACGGCg-GCGGUg -3'
miRNA:   3'- gaCGCa----CGGCAG-GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 149738 0.67 0.685764
Target:  5'- -gGCGUGCCGguggagcggcgggaCCGcugucuCGGCCUGUuggagcgGGCg -3'
miRNA:   3'- gaCGCACGGCa-------------GGCu-----GCCGGACG-------CCG- -5'
10970 3' -62.2 NC_002794.1 + 103777 0.67 0.682913
Target:  5'- -gGCGUGCaucUCCGGCGGCUgagcuugaggUGCGccuGCg -3'
miRNA:   3'- gaCGCACGgc-AGGCUGCCGG----------ACGC---CG- -5'
10970 3' -62.2 NC_002794.1 + 95002 0.67 0.682913
Target:  5'- -cGCuUGCUGUCgcugauggGGCGGCUgUGCGGCa -3'
miRNA:   3'- gaCGcACGGCAGg-------CUGCCGG-ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 176727 0.67 0.682913
Target:  5'- -gGCGU-CUGgagaugcgacCUGugGGUCUGCGGCa -3'
miRNA:   3'- gaCGCAcGGCa---------GGCugCCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 116682 0.67 0.682913
Target:  5'- -aGCGUGUCGaUCCGGgagcCGGCCUcCaGCa -3'
miRNA:   3'- gaCGCACGGC-AGGCU----GCCGGAcGcCG- -5'
10970 3' -62.2 NC_002794.1 + 105516 0.67 0.6772
Target:  5'- -gGuCGcGCCGUCCGAagcggacgugagaucCGGCg-GCGGCu -3'
miRNA:   3'- gaC-GCaCGGCAGGCU---------------GCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 183558 0.67 0.673385
Target:  5'- aCUGCGcGCCGagccgCCGACacgGGCCUuuaauacggugGgGGCg -3'
miRNA:   3'- -GACGCaCGGCa----GGCUG---CCGGA-----------CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 101821 0.67 0.673385
Target:  5'- -gGCGcGCCGUgCGcgaGGCCaUGCGGg -3'
miRNA:   3'- gaCGCaCGGCAgGCug-CCGG-ACGCCg -5'
10970 3' -62.2 NC_002794.1 + 26086 0.67 0.673385
Target:  5'- -cGCGggGCagcgCCGACGGCCc-CGGCg -3'
miRNA:   3'- gaCGCa-CGgca-GGCUGCCGGacGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.