miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 61143 0.67 0.673385
Target:  5'- cCUGC-UGCCGcCCGaccccgagcgcGCGGuCCggaucgGCGGCu -3'
miRNA:   3'- -GACGcACGGCaGGC-----------UGCC-GGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 26086 0.67 0.673385
Target:  5'- -cGCGggGCagcgCCGACGGCCc-CGGCg -3'
miRNA:   3'- gaCGCa-CGgca-GGCUGCCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 101821 0.67 0.673385
Target:  5'- -gGCGcGCCGUgCGcgaGGCCaUGCGGg -3'
miRNA:   3'- gaCGCaCGGCAgGCug-CCGG-ACGCCg -5'
10970 3' -62.2 NC_002794.1 + 183558 0.67 0.673385
Target:  5'- aCUGCGcGCCGagccgCCGACacgGGCCUuuaauacggugGgGGCg -3'
miRNA:   3'- -GACGCaCGGCa----GGCUG---CCGGA-----------CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 133501 0.67 0.673385
Target:  5'- -gGCGacCCGUCCGACGGCgaccUGGCc -3'
miRNA:   3'- gaCGCacGGCAGGCUGCCGgac-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 13956 0.67 0.673385
Target:  5'- gUGCGUGUCGagCCGcuCGGagacguucgCUGCGGCc -3'
miRNA:   3'- gACGCACGGCa-GGCu-GCCg--------GACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 154342 0.67 0.670521
Target:  5'- -cGgGUGCCGcggCCGAgcucccgcgcggucCaGGCCgcgGCGGCg -3'
miRNA:   3'- gaCgCACGGCa--GGCU--------------G-CCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 132475 0.67 0.667654
Target:  5'- -cGgGUGUCGUCucagucgucgaugaaCGAUGGCgUgGCGGCa -3'
miRNA:   3'- gaCgCACGGCAG---------------GCUGCCGgA-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 44537 0.67 0.663828
Target:  5'- -aGCGcGCCGUCgucguCGcCGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCGGCAG-----GCuGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 8745 0.67 0.663828
Target:  5'- -cGCGUGUCucgggcguGUCgCGACGGCgUGaagaCGGCg -3'
miRNA:   3'- gaCGCACGG--------CAG-GCUGCCGgAC----GCCG- -5'
10970 3' -62.2 NC_002794.1 + 117057 0.67 0.658083
Target:  5'- --aCGgGCCGUCCGugagccucggguacgGCGGCa-GCGGCg -3'
miRNA:   3'- gacGCaCGGCAGGC---------------UGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 182966 0.67 0.658083
Target:  5'- -gGCG-GCCGgcuccucguucgagCCGACGGCCgGCgcuucgccgcgGGCg -3'
miRNA:   3'- gaCGCaCGGCa-------------GGCUGCCGGaCG-----------CCG- -5'
10970 3' -62.2 NC_002794.1 + 89466 0.67 0.654249
Target:  5'- -cGCG-GC--UCCGGggacucCGGCCUGCGGUg -3'
miRNA:   3'- gaCGCaCGgcAGGCU------GCCGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 16711 0.67 0.654249
Target:  5'- -cGCucGCCGUCCGAgGaGUCUGCgccGGCu -3'
miRNA:   3'- gaCGcaCGGCAGGCUgC-CGGACG---CCG- -5'
10970 3' -62.2 NC_002794.1 + 14571 0.67 0.65329
Target:  5'- -gGCGaGCCGgCCGACcgaagcgGGCC-GUGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUG-------CCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 184598 0.67 0.644654
Target:  5'- -cGCG-GCCGcgggaUCgGcaACGGCCaGCGGCa -3'
miRNA:   3'- gaCGCaCGGC-----AGgC--UGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 152583 0.67 0.644654
Target:  5'- -cGCGgcgGCCG-CC-ACGucCCUGCGGCg -3'
miRNA:   3'- gaCGCa--CGGCaGGcUGCc-GGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 98964 0.67 0.644654
Target:  5'- gCUGgGcGCCGU-CGGCGGCgCcGUGGCc -3'
miRNA:   3'- -GACgCaCGGCAgGCUGCCG-GaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 62119 0.67 0.644654
Target:  5'- gUGCGUGUCGagCGACcGCCa-CGGCg -3'
miRNA:   3'- gACGCACGGCagGCUGcCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 91494 0.67 0.644654
Target:  5'- gCUGU-UGCUGUgCGACGccaucGCCUGCGaGCu -3'
miRNA:   3'- -GACGcACGGCAgGCUGC-----CGGACGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.