miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 107191 0.67 0.644654
Target:  5'- -gGCGccGCCG-CCGcCGGCCUcgccCGGCg -3'
miRNA:   3'- gaCGCa-CGGCaGGCuGCCGGAc---GCCG- -5'
10970 3' -62.2 NC_002794.1 + 21461 0.67 0.644654
Target:  5'- -gGCGUcGCCGU--GACGGCaacgGUGGCa -3'
miRNA:   3'- gaCGCA-CGGCAggCUGCCGga--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 42055 0.67 0.640813
Target:  5'- -cGCGUGCCagaugauguuggCCGACuGGCC-GCGGg -3'
miRNA:   3'- gaCGCACGGca----------GGCUG-CCGGaCGCCg -5'
10970 3' -62.2 NC_002794.1 + 19452 0.67 0.63505
Target:  5'- -aGCGgGCaCGagCGGCGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCG-GCagGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 130462 0.67 0.63505
Target:  5'- -gGCGaGgCG-CUGGCGGCUUGCGuGCg -3'
miRNA:   3'- gaCGCaCgGCaGGCUGCCGGACGC-CG- -5'
10970 3' -62.2 NC_002794.1 + 37775 0.67 0.63505
Target:  5'- -aGCG-GCCGUCguCGuCGGCC-GCaGGCg -3'
miRNA:   3'- gaCGCaCGGCAG--GCuGCCGGaCG-CCG- -5'
10970 3' -62.2 NC_002794.1 + 39539 0.67 0.63505
Target:  5'- cCUGgG-GCUG-CUGuGCGGCCucUGCGGCg -3'
miRNA:   3'- -GACgCaCGGCaGGC-UGCCGG--ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 147972 0.67 0.63505
Target:  5'- -cGCGUGCagCGUgUGGCGGugucCCUGCuGGCc -3'
miRNA:   3'- gaCGCACG--GCAgGCUGCC----GGACG-CCG- -5'
10970 3' -62.2 NC_002794.1 + 129927 0.67 0.63505
Target:  5'- -cGCcagGCCGUggCGACGGCg-GCGGCg -3'
miRNA:   3'- gaCGca-CGGCAg-GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 102159 0.67 0.63505
Target:  5'- -gGCGUGCgCG-CCGG-GGCCaucGUGGCg -3'
miRNA:   3'- gaCGCACG-GCaGGCUgCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 185460 0.67 0.63505
Target:  5'- -cGCGacaaacGCCGcgggCGGCGGCC-GCGGCg -3'
miRNA:   3'- gaCGCa-----CGGCag--GCUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 63481 0.68 0.625444
Target:  5'- -gGCGgccGCCGU-CGACGacGCC-GCGGCg -3'
miRNA:   3'- gaCGCa--CGGCAgGCUGC--CGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 186318 0.68 0.625444
Target:  5'- -gGCGcGCuCGUCCuccaacacgaucGACGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCG-GCAGG------------CUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 102632 0.68 0.625444
Target:  5'- -gGCG-GUCaUCCGcCGGCUgGCGGCg -3'
miRNA:   3'- gaCGCaCGGcAGGCuGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 49427 0.68 0.625444
Target:  5'- -gGCG-GCCGUCaCGGCGuCCggcGCGGUc -3'
miRNA:   3'- gaCGCaCGGCAG-GCUGCcGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 194926 0.68 0.624484
Target:  5'- -aGCG-GCCGcaccagcUCCGACGGCgacgucgucagCaGCGGCa -3'
miRNA:   3'- gaCGCaCGGC-------AGGCUGCCG-----------GaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 34061 0.68 0.621603
Target:  5'- -cGCGcacgacccGCCGUucccgCCGGCGGCCgggcagccgucggGCGGCc -3'
miRNA:   3'- gaCGCa-------CGGCA-----GGCUGCCGGa------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 105429 0.68 0.615843
Target:  5'- -gGUG-GCCG-CCGcCGcGCCgGCGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCuGC-CGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 140005 0.68 0.615843
Target:  5'- gUGCGgguggagGCCGcggaggCCG-CGGCCcccgcggGCGGCg -3'
miRNA:   3'- gACGCa------CGGCa-----GGCuGCCGGa------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 94400 0.68 0.606253
Target:  5'- -cGCGUGCgGggaCCG-CGGUgUGgGGCg -3'
miRNA:   3'- gaCGCACGgCa--GGCuGCCGgACgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.