miRNA display CGI


Results 1 - 20 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 609 0.72 0.36151
Target:  5'- -cGgGUGCgGUCaGGCGGCCcggUGUGGCg -3'
miRNA:   3'- gaCgCACGgCAGgCUGCCGG---ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 799 0.72 0.36151
Target:  5'- --cCGUGCCGUCCgGGCGGUCgggagGgGGCc -3'
miRNA:   3'- gacGCACGGCAGG-CUGCCGGa----CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 8745 0.67 0.663828
Target:  5'- -cGCGUGUCucgggcguGUCgCGACGGCgUGaagaCGGCg -3'
miRNA:   3'- gaCGCACGG--------CAG-GCUGCCGgAC----GCCG- -5'
10970 3' -62.2 NC_002794.1 + 12211 0.72 0.384431
Target:  5'- -gGaCGUGCCGgcggcgUCGGCGGCgCcgGCGGCg -3'
miRNA:   3'- gaC-GCACGGCa-----GGCUGCCG-Ga-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 13788 0.66 0.711243
Target:  5'- -gGUGgcuccgGCCGUCuucgCGACgGGCCcggccgGCGGCg -3'
miRNA:   3'- gaCGCa-----CGGCAG----GCUG-CCGGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 13956 0.67 0.673385
Target:  5'- gUGCGUGUCGagCCGcuCGGagacguucgCUGCGGCc -3'
miRNA:   3'- gACGCACGGCa-GGCu-GCCg--------GACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 14571 0.67 0.65329
Target:  5'- -gGCGaGCCGgCCGACcgaagcgGGCC-GUGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUG-------CCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 15219 0.67 0.673385
Target:  5'- -gGCGUcccCCGUCCG-CGGgCUGcCGGUc -3'
miRNA:   3'- gaCGCAc--GGCAGGCuGCCgGAC-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 16711 0.67 0.654249
Target:  5'- -cGCucGCCGUCCGAgGaGUCUGCgccGGCu -3'
miRNA:   3'- gaCGcaCGGCAGGCUgC-CGGACG---CCG- -5'
10970 3' -62.2 NC_002794.1 + 18251 0.66 0.701849
Target:  5'- -cGCG-GCCGaCCGGCGaCCgcgagaugcGCGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCcGGa--------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 18682 0.66 0.701849
Target:  5'- gCUGCcgccGCCGucUCCGgcACGGCg-GCGGCg -3'
miRNA:   3'- -GACGca--CGGC--AGGC--UGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 18731 0.68 0.606253
Target:  5'- -cGaCGaGCCGcCCcaacgccacGACGGCCgGCGGCa -3'
miRNA:   3'- gaC-GCaCGGCaGG---------CUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 19249 0.7 0.494053
Target:  5'- aUGaUGUGCCGaCCGgccGCGGCCcccGUGGCg -3'
miRNA:   3'- gAC-GCACGGCaGGC---UGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 19452 0.67 0.63505
Target:  5'- -aGCGgGCaCGagCGGCGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCG-GCagGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 21461 0.67 0.644654
Target:  5'- -gGCGUcGCCGU--GACGGCaacgGUGGCa -3'
miRNA:   3'- gaCGCA-CGGCAggCUGCCGga--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 21887 0.69 0.530617
Target:  5'- -cGCGgGgUGUCCG-CGGCCUgcgucgguggugGCGGCg -3'
miRNA:   3'- gaCGCaCgGCAGGCuGCCGGA------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 23103 0.66 0.701849
Target:  5'- -gGaCGUGgCGUCCccguUGGCCUGCGuGUg -3'
miRNA:   3'- gaC-GCACgGCAGGcu--GCCGGACGC-CG- -5'
10970 3' -62.2 NC_002794.1 + 23997 0.68 0.587129
Target:  5'- -cGCu--CCGUCCGACgGGCCgccgucaccGCGGCg -3'
miRNA:   3'- gaCGcacGGCAGGCUG-CCGGa--------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 26086 0.67 0.673385
Target:  5'- -cGCGggGCagcgCCGACGGCCc-CGGCg -3'
miRNA:   3'- gaCGCa-CGgca-GGCUGCCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 29203 0.75 0.250103
Target:  5'- --cCGU-CCGUCCGGCGGUCgGCGGCc -3'
miRNA:   3'- gacGCAcGGCAGGCUGCCGGaCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.