miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 32812 0.68 0.606253
Target:  5'- -cGCGaccGUCGUCuuCGuCGGCCUcGCGGCc -3'
miRNA:   3'- gaCGCa--CGGCAG--GCuGCCGGA-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 32860 0.74 0.279609
Target:  5'- -aGCG-GCCGagCCGGCGGgCgGCGGCg -3'
miRNA:   3'- gaCGCaCGGCa-GGCUGCCgGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 34061 0.68 0.621603
Target:  5'- -cGCGcacgacccGCCGUucccgCCGGCGGCCgggcagccgucggGCGGCc -3'
miRNA:   3'- gaCGCa-------CGGCA-----GGCUGCCGGa------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 36354 0.69 0.558672
Target:  5'- -gGCGUGCgCGgccaCCGgguGCGcGCCcGCGGCg -3'
miRNA:   3'- gaCGCACG-GCa---GGC---UGC-CGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 36892 0.66 0.692403
Target:  5'- -cGCGUGCagagCGUCCaGA-GGUC-GCGGCg -3'
miRNA:   3'- gaCGCACG----GCAGG-CUgCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 37737 0.73 0.346766
Target:  5'- -gGCGgcGCCG-CCGGCGGCggcGCGGCg -3'
miRNA:   3'- gaCGCa-CGGCaGGCUGCCGga-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 37775 0.67 0.63505
Target:  5'- -aGCG-GCCGUCguCGuCGGCC-GCaGGCg -3'
miRNA:   3'- gaCGCaCGGCAG--GCuGCCGGaCG-CCG- -5'
10970 3' -62.2 NC_002794.1 + 38440 0.7 0.494053
Target:  5'- -gGCGgGCCGgacugaggagCCGgcGCGGCC-GCGGCg -3'
miRNA:   3'- gaCGCaCGGCa---------GGC--UGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 39539 0.67 0.63505
Target:  5'- cCUGgG-GCUG-CUGuGCGGCCucUGCGGCg -3'
miRNA:   3'- -GACgCaCGGCaGGC-UGCCGG--ACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 41246 0.72 0.384431
Target:  5'- -cGCG-GCCG-CCGAC-GCCgGCGGCc -3'
miRNA:   3'- gaCGCaCGGCaGGCUGcCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 42055 0.67 0.640813
Target:  5'- -cGCGUGCCagaugauguuggCCGACuGGCC-GCGGg -3'
miRNA:   3'- gaCGCACGGca----------GGCUG-CCGGaCGCCg -5'
10970 3' -62.2 NC_002794.1 + 42651 0.71 0.450052
Target:  5'- -cGCG-GCCGaagCCGACGGCgCcGcCGGCa -3'
miRNA:   3'- gaCGCaCGGCa--GGCUGCCG-GaC-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 44537 0.67 0.663828
Target:  5'- -aGCGcGCCGUCgucguCGcCGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCGGCAG-----GCuGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 44896 0.68 0.606253
Target:  5'- cCUGCGUcuGCCG-CCGAUcuccuuGGCCU-CGGUc -3'
miRNA:   3'- -GACGCA--CGGCaGGCUG------CCGGAcGCCG- -5'
10970 3' -62.2 NC_002794.1 + 48050 0.71 0.416452
Target:  5'- gUGCGUGCUGggcacggcgCUGAUGGCCggccaGCGGg -3'
miRNA:   3'- gACGCACGGCa--------GGCUGCCGGa----CGCCg -5'
10970 3' -62.2 NC_002794.1 + 48600 0.72 0.384431
Target:  5'- -cGCGUcGCCGUCgGcguCGGCCUcagacgcggaGCGGCc -3'
miRNA:   3'- gaCGCA-CGGCAGgCu--GCCGGA----------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 49162 0.7 0.494053
Target:  5'- -aGCGgGCCGUCCGGgaGGCCgagcccaCGGCc -3'
miRNA:   3'- gaCGCaCGGCAGGCUg-CCGGac-----GCCG- -5'
10970 3' -62.2 NC_002794.1 + 49396 0.73 0.325468
Target:  5'- -cGCc-GCCGUCggccaCGGCGGCCgcgGCGGCg -3'
miRNA:   3'- gaCGcaCGGCAG-----GCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 49427 0.68 0.625444
Target:  5'- -gGCG-GCCGUCaCGGCGuCCggcGCGGUc -3'
miRNA:   3'- gaCGCaCGGCAG-GCUGCcGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 50127 0.66 0.739041
Target:  5'- -----aGCUGUCCGAUGGUCgacagcgggaUGCGGUg -3'
miRNA:   3'- gacgcaCGGCAGGCUGCCGG----------ACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.