miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 50626 0.7 0.476205
Target:  5'- gCUGCuUGcCCGUCCGGCGGUC-GCGa- -3'
miRNA:   3'- -GACGcAC-GGCAGGCUGCCGGaCGCcg -5'
10970 3' -62.2 NC_002794.1 + 55299 0.66 0.701849
Target:  5'- -gGCGgcgGCggCGUCgCGGCGGgCgcggGCGGCu -3'
miRNA:   3'- gaCGCa--CG--GCAG-GCUGCCgGa---CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 55358 0.71 0.424709
Target:  5'- -gGCG-GCCGa--GGCGGCCgagGCGGCc -3'
miRNA:   3'- gaCGCaCGGCaggCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 55385 0.71 0.424709
Target:  5'- -gGCG-GCCGa--GGCGGCCgagGCGGCc -3'
miRNA:   3'- gaCGCaCGGCaggCUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 56141 0.76 0.223215
Target:  5'- -aGCGUGUCGUaCGGCGuGCCgcaGCGGCa -3'
miRNA:   3'- gaCGCACGGCAgGCUGC-CGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 56313 0.69 0.5122
Target:  5'- -cGCG-GUCG-CUGGCGGCCgugGcCGGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCGGa--C-GCCG- -5'
10970 3' -62.2 NC_002794.1 + 58042 0.71 0.408295
Target:  5'- -cGCGccGcCCGUCCccgucGGCGGCCccgGCGGCg -3'
miRNA:   3'- gaCGCa-C-GGCAGG-----CUGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 59024 0.78 0.17021
Target:  5'- aCUGCGUGCUGcCCG-CGcucaccaacaaccgcGCCUGCGGCc -3'
miRNA:   3'- -GACGCACGGCaGGCuGC---------------CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 61143 0.67 0.673385
Target:  5'- cCUGC-UGCCGcCCGaccccgagcgcGCGGuCCggaucgGCGGCu -3'
miRNA:   3'- -GACGcACGGCaGGC-----------UGCC-GGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 61524 0.71 0.433062
Target:  5'- -gGCG-GCCG-CCGGCGGCC-GCcGCg -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCGGaCGcCG- -5'
10970 3' -62.2 NC_002794.1 + 61823 0.72 0.392282
Target:  5'- -gGCG-GCCG-CCGGCGGCCgGCGuCa -3'
miRNA:   3'- gaCGCaCGGCaGGCUGCCGGaCGCcG- -5'
10970 3' -62.2 NC_002794.1 + 61874 0.68 0.59668
Target:  5'- -cGCGcGCCGUCguCGGC-GCCgcGCGGCg -3'
miRNA:   3'- gaCGCaCGGCAG--GCUGcCGGa-CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 62050 0.71 0.424709
Target:  5'- cCUGuCGgugGCCGacgCCGGCGGCgacgccgGCGGCg -3'
miRNA:   3'- -GAC-GCa--CGGCa--GGCUGCCGga-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 62119 0.67 0.644654
Target:  5'- gUGCGUGUCGagCGACcGCCa-CGGCg -3'
miRNA:   3'- gACGCACGGCagGCUGcCGGacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 63481 0.68 0.625444
Target:  5'- -gGCGgccGCCGU-CGACGacGCC-GCGGCg -3'
miRNA:   3'- gaCGCa--CGGCAgGCUGC--CGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 63648 0.7 0.48509
Target:  5'- uCUGCGUGaccgccaaCGUCuCGgacgacgagcGCGGCC-GCGGCg -3'
miRNA:   3'- -GACGCACg-------GCAG-GC----------UGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 63996 0.66 0.720579
Target:  5'- -aGCGggcuCCGUCUG--GGuCCUGCGGCu -3'
miRNA:   3'- gaCGCac--GGCAGGCugCC-GGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 64825 0.68 0.59668
Target:  5'- -gGCGaGCCGgcgCCGACGaCCggacggcGCGGCg -3'
miRNA:   3'- gaCGCaCGGCa--GGCUGCcGGa------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 66845 0.71 0.424709
Target:  5'- -gGCGccGCCGUCgGcgcggcgaggccGCGGCgUGCGGCu -3'
miRNA:   3'- gaCGCa-CGGCAGgC------------UGCCGgACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 69017 0.66 0.711243
Target:  5'- -cGCGUGCgCGacgCCGGCGcCCUcGcCGGCu -3'
miRNA:   3'- gaCGCACG-GCa--GGCUGCcGGA-C-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.