miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 194926 0.68 0.624484
Target:  5'- -aGCG-GCCGcaccagcUCCGACGGCgacgucgucagCaGCGGCa -3'
miRNA:   3'- gaCGCaCGGC-------AGGCUGCCG-----------GaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 192239 0.72 0.400238
Target:  5'- -gGCGcUGCCGUcgCCGACGGC--GCGGUu -3'
miRNA:   3'- gaCGC-ACGGCA--GGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 192143 0.7 0.467401
Target:  5'- gCUGC-UGCCGgcgcggUCgCGGCGgaGCCUGCGGUa -3'
miRNA:   3'- -GACGcACGGC------AG-GCUGC--CGGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 192022 0.66 0.720579
Target:  5'- -cGCGgcUGCUGUUucugUGGCGGCg-GCGGCu -3'
miRNA:   3'- gaCGC--ACGGCAG----GCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 190738 0.69 0.549269
Target:  5'- -aGCGcccgccGCCGUCuCGACGGgg-GCGGCg -3'
miRNA:   3'- gaCGCa-----CGGCAG-GCUGCCggaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 189868 0.66 0.739041
Target:  5'- -gGCGUcgucGCCG-CCGAcCGGCCcGCucgGGCc -3'
miRNA:   3'- gaCGCA----CGGCaGGCU-GCCGGaCG---CCG- -5'
10970 3' -62.2 NC_002794.1 + 188344 0.71 0.424709
Target:  5'- -gGCGgcGCCGUCgCGcccgucCGGCCgGCGGCg -3'
miRNA:   3'- gaCGCa-CGGCAG-GCu-----GCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 188238 0.68 0.587129
Target:  5'- -cGuCGUcGUCGaCCGGCGGCg-GCGGCg -3'
miRNA:   3'- gaC-GCA-CGGCaGGCUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 187478 0.68 0.587129
Target:  5'- -cGCGcGCCGggCCGAggacgaGGCCgcgcagGCGGCc -3'
miRNA:   3'- gaCGCaCGGCa-GGCUg-----CCGGa-----CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 186318 0.68 0.625444
Target:  5'- -gGCGcGCuCGUCCuccaacacgaucGACGGCg-GCGGCg -3'
miRNA:   3'- gaCGCaCG-GCAGG------------CUGCCGgaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 185769 0.66 0.729847
Target:  5'- -cGCG-GCCGcCCGucacacguCGGCCggcGCGGg -3'
miRNA:   3'- gaCGCaCGGCaGGCu-------GCCGGa--CGCCg -5'
10970 3' -62.2 NC_002794.1 + 185460 0.67 0.63505
Target:  5'- -cGCGacaaacGCCGcgggCGGCGGCC-GCGGCg -3'
miRNA:   3'- gaCGCa-----CGGCag--GCUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 184598 0.67 0.644654
Target:  5'- -cGCG-GCCGcgggaUCgGcaACGGCCaGCGGCa -3'
miRNA:   3'- gaCGCaCGGC-----AGgC--UGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 183558 0.67 0.673385
Target:  5'- aCUGCGcGCCGagccgCCGACacgGGCCUuuaauacggugGgGGCg -3'
miRNA:   3'- -GACGCaCGGCa----GGCUG---CCGGA-----------CgCCG- -5'
10970 3' -62.2 NC_002794.1 + 182966 0.67 0.658083
Target:  5'- -gGCG-GCCGgcuccucguucgagCCGACGGCCgGCgcuucgccgcgGGCg -3'
miRNA:   3'- gaCGCaCGGCa-------------GGCUGCCGGaCG-----------CCG- -5'
10970 3' -62.2 NC_002794.1 + 180843 0.68 0.59668
Target:  5'- -gGCGUcaccGUCGUCU-ACGGCCUcgucggagGCGGCg -3'
miRNA:   3'- gaCGCA----CGGCAGGcUGCCGGA--------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 180735 0.73 0.318588
Target:  5'- -cGCGgacgacGCCGUCCGgcuccucgGCGGCUucgGCGGCa -3'
miRNA:   3'- gaCGCa-----CGGCAGGC--------UGCCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 180666 0.68 0.587129
Target:  5'- -gGCGUGCCGgggaacUCGcCGGCCgcuccCGGCg -3'
miRNA:   3'- gaCGCACGGCa-----GGCuGCCGGac---GCCG- -5'
10970 3' -62.2 NC_002794.1 + 180005 0.68 0.59668
Target:  5'- -gGCGggcccgGCCacgaCGACGGCC-GCGGCc -3'
miRNA:   3'- gaCGCa-----CGGcag-GCUGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 176727 0.67 0.682913
Target:  5'- -gGCGU-CUGgagaugcgacCUGugGGUCUGCGGCa -3'
miRNA:   3'- gaCGCAcGGCa---------GGCugCCGGACGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.