miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 3' -62.2 NC_002794.1 + 156982 0.68 0.56812
Target:  5'- -cGCGUGCCucuauguaagGUCCuaGCgGGCCcGCGGCc -3'
miRNA:   3'- gaCGCACGG----------CAGGc-UG-CCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 156400 0.73 0.325468
Target:  5'- -aGCG-GCCGgcgCCG-CGGCC-GCGGCc -3'
miRNA:   3'- gaCGCaCGGCa--GGCuGCCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 154342 0.67 0.670521
Target:  5'- -cGgGUGCCGcggCCGAgcucccgcgcggucCaGGCCgcgGCGGCg -3'
miRNA:   3'- gaCgCACGGCa--GGCU--------------G-CCGGa--CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 153347 0.66 0.711243
Target:  5'- -cGCGUGuuGUCaggacGCGGCCcggcUGCGcGCc -3'
miRNA:   3'- gaCGCACggCAGgc---UGCCGG----ACGC-CG- -5'
10970 3' -62.2 NC_002794.1 + 152583 0.67 0.644654
Target:  5'- -cGCGgcgGCCG-CC-ACGucCCUGCGGCg -3'
miRNA:   3'- gaCGCa--CGGCaGGcUGCc-GGACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 152421 0.66 0.729847
Target:  5'- gCUGCcccggGCCGUCUGuCGGCagCUG-GGCu -3'
miRNA:   3'- -GACGca---CGGCAGGCuGCCG--GACgCCG- -5'
10970 3' -62.2 NC_002794.1 + 151590 0.66 0.701849
Target:  5'- -cGCGcGCCG-CCGccGCgGGCCcGCGGUu -3'
miRNA:   3'- gaCGCaCGGCaGGC--UG-CCGGaCGCCG- -5'
10970 3' -62.2 NC_002794.1 + 150228 0.68 0.577607
Target:  5'- gCUGCGUGCgaCGgcagCUGGaaGCgCUGCGGCu -3'
miRNA:   3'- -GACGCACG--GCa---GGCUgcCG-GACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 149738 0.67 0.685764
Target:  5'- -gGCGUGCCGguggagcggcgggaCCGcugucuCGGCCUGUuggagcgGGCg -3'
miRNA:   3'- gaCGCACGGCa-------------GGCu-----GCCGGACG-------CCG- -5'
10970 3' -62.2 NC_002794.1 + 148299 0.73 0.325468
Target:  5'- -cGaCGUGCUGUacgaccCCGACGGCCgaccGCGGUu -3'
miRNA:   3'- gaC-GCACGGCA------GGCUGCCGGa---CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 147972 0.67 0.63505
Target:  5'- -cGCGUGCagCGUgUGGCGGugucCCUGCuGGCc -3'
miRNA:   3'- gaCGCACG--GCAgGCUGCC----GGACG-CCG- -5'
10970 3' -62.2 NC_002794.1 + 146981 0.69 0.5122
Target:  5'- -cGCGagGUCGgcgCCGcCGGCCgacgucgGCGGCg -3'
miRNA:   3'- gaCGCa-CGGCa--GGCuGCCGGa------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 143834 0.7 0.503091
Target:  5'- -aGCG-GCCgGUCCGAC-GCCUcCGGCc -3'
miRNA:   3'- gaCGCaCGG-CAGGCUGcCGGAcGCCG- -5'
10970 3' -62.2 NC_002794.1 + 143573 0.79 0.146037
Target:  5'- gUGCGcGCCGUCCucGGCGGCgCUGUGGUc -3'
miRNA:   3'- gACGCaCGGCAGG--CUGCCG-GACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 142987 0.68 0.57191
Target:  5'- gCUGCGUGcCCG-CCGugGccaggaacccggucaGCgUGCGGUc -3'
miRNA:   3'- -GACGCAC-GGCaGGCugC---------------CGgACGCCG- -5'
10970 3' -62.2 NC_002794.1 + 142121 0.66 0.733534
Target:  5'- uCUGCGacCCGgcggCCGACcGCCgggucacggcggagGCGGCg -3'
miRNA:   3'- -GACGCacGGCa---GGCUGcCGGa-------------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 141782 0.7 0.48509
Target:  5'- -cGaCGaGCCGUCCGACGGgC-GCGGg -3'
miRNA:   3'- gaC-GCaCGGCAGGCUGCCgGaCGCCg -5'
10970 3' -62.2 NC_002794.1 + 141305 0.66 0.720579
Target:  5'- -gGCGcGCCGg-CGACGGCac-CGGCg -3'
miRNA:   3'- gaCGCaCGGCagGCUGCCGgacGCCG- -5'
10970 3' -62.2 NC_002794.1 + 140005 0.68 0.615843
Target:  5'- gUGCGgguggagGCCGcggaggCCG-CGGCCcccgcggGCGGCg -3'
miRNA:   3'- gACGCa------CGGCa-----GGCuGCCGGa------CGCCG- -5'
10970 3' -62.2 NC_002794.1 + 137593 0.78 0.1686
Target:  5'- gUGCGgggaGCCGccgCCGGCGGUCgcgGCGGCg -3'
miRNA:   3'- gACGCa---CGGCa--GGCUGCCGGa--CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.