miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10970 5' -51.9 NC_002794.1 + 75526 0.66 0.991812
Target:  5'- uUCACCGAgGACUcccgaaacgGCcccuacccaccAUCGGCCcGCUCa -3'
miRNA:   3'- -AGUGGCU-CUGAa--------CG-----------UAGUUGGaCGAG- -5'
10970 5' -51.9 NC_002794.1 + 138711 0.66 0.990631
Target:  5'- gCGgCGuGGACUcGCGUCgAGCCgGCUCg -3'
miRNA:   3'- aGUgGC-UCUGAaCGUAG-UUGGaCGAG- -5'
10970 5' -51.9 NC_002794.1 + 113931 0.66 0.987871
Target:  5'- cCGCCGAGGCgacggGCcgCuGCCggGCUUc -3'
miRNA:   3'- aGUGGCUCUGaa---CGuaGuUGGa-CGAG- -5'
10970 5' -51.9 NC_002794.1 + 19819 0.66 0.987871
Target:  5'- gCGCCG-GAC-UGgAUCAAgCUGCUg -3'
miRNA:   3'- aGUGGCuCUGaACgUAGUUgGACGAg -5'
10970 5' -51.9 NC_002794.1 + 141600 0.67 0.986273
Target:  5'- gUCGCCGGGcg--GCucggCGACCgGCUCg -3'
miRNA:   3'- -AGUGGCUCugaaCGua--GUUGGaCGAG- -5'
10970 5' -51.9 NC_002794.1 + 57941 0.67 0.986273
Target:  5'- uUCGCCGAcGCgcUGCG-CAGCCUGUg- -3'
miRNA:   3'- -AGUGGCUcUGa-ACGUaGUUGGACGag -5'
10970 5' -51.9 NC_002794.1 + 8113 0.67 0.984519
Target:  5'- cCACCGAG-CggGCggCGGCCUcCUCg -3'
miRNA:   3'- aGUGGCUCuGaaCGuaGUUGGAcGAG- -5'
10970 5' -51.9 NC_002794.1 + 140705 0.67 0.984519
Target:  5'- cCGCCGcgacccgggaauGGACguuCGUCAACCUGCg- -3'
miRNA:   3'- aGUGGC------------UCUGaacGUAGUUGGACGag -5'
10970 5' -51.9 NC_002794.1 + 10968 0.67 0.983388
Target:  5'- -gGCCGAGACguccgau-GCCUGCUCc -3'
miRNA:   3'- agUGGCUCUGaacguaguUGGACGAG- -5'
10970 5' -51.9 NC_002794.1 + 191505 0.67 0.980507
Target:  5'- cCACCGAGAggugccagcgcCggGCGUCGGCCcGCg- -3'
miRNA:   3'- aGUGGCUCU-----------GaaCGUAGUUGGaCGag -5'
10970 5' -51.9 NC_002794.1 + 127346 0.67 0.978231
Target:  5'- -uGCCGAGACgcucgcggcgGCGgcgCGGCC-GCUCg -3'
miRNA:   3'- agUGGCUCUGaa--------CGUa--GUUGGaCGAG- -5'
10970 5' -51.9 NC_002794.1 + 126384 0.67 0.978231
Target:  5'- gCGCCGGGGCcUGCGcggCGGCgUGCg- -3'
miRNA:   3'- aGUGGCUCUGaACGUa--GUUGgACGag -5'
10970 5' -51.9 NC_002794.1 + 63606 0.68 0.975765
Target:  5'- gCACCG-GACUcucGCuccUCAACCUGC-Cg -3'
miRNA:   3'- aGUGGCuCUGAa--CGu--AGUUGGACGaG- -5'
10970 5' -51.9 NC_002794.1 + 125813 0.68 0.975765
Target:  5'- cUCGCCG-GGCUcUGCGUCcucggcgcCCUGCUg -3'
miRNA:   3'- -AGUGGCuCUGA-ACGUAGuu------GGACGAg -5'
10970 5' -51.9 NC_002794.1 + 99806 0.68 0.973101
Target:  5'- gCGCCGcGGGCgccgGCGccgucggcCGACCUGCUCu -3'
miRNA:   3'- aGUGGC-UCUGaa--CGUa-------GUUGGACGAG- -5'
10970 5' -51.9 NC_002794.1 + 114137 0.68 0.973101
Target:  5'- cCGCCGgccagggcgcgcAGGCgccGCGUCAGCC-GCUCc -3'
miRNA:   3'- aGUGGC------------UCUGaa-CGUAGUUGGaCGAG- -5'
10970 5' -51.9 NC_002794.1 + 106467 0.68 0.970231
Target:  5'- gUCGCCGuGACUcgGCG-CAuCCUGCg- -3'
miRNA:   3'- -AGUGGCuCUGAa-CGUaGUuGGACGag -5'
10970 5' -51.9 NC_002794.1 + 35137 0.68 0.969932
Target:  5'- aCACCGAGACgggGCAgcucgugUCGACCgaggaGCa- -3'
miRNA:   3'- aGUGGCUCUGaa-CGU-------AGUUGGa----CGag -5'
10970 5' -51.9 NC_002794.1 + 155926 0.68 0.963846
Target:  5'- -aGCCGGGuGCUUGcCGUC-ACCgggGCUCu -3'
miRNA:   3'- agUGGCUC-UGAAC-GUAGuUGGa--CGAG- -5'
10970 5' -51.9 NC_002794.1 + 66032 0.68 0.960318
Target:  5'- gUCGCCGucgucgucGGGCcgGCAgcggCGGCCUGUUCu -3'
miRNA:   3'- -AGUGGC--------UCUGaaCGUa---GUUGGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.