Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10970 | 5' | -51.9 | NC_002794.1 | + | 127346 | 0.67 | 0.978231 |
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Target: 5'- -uGCCGAGACgcucgcggcgGCGgcgCGGCC-GCUCg -3' miRNA: 3'- agUGGCUCUGaa--------CGUa--GUUGGaCGAG- -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 138711 | 0.66 | 0.990631 |
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Target: 5'- gCGgCGuGGACUcGCGUCgAGCCgGCUCg -3' miRNA: 3'- aGUgGC-UCUGAaCGUAG-UUGGaCGAG- -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 140549 | 0.71 | 0.899121 |
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Target: 5'- aUCGCCGAGGgacGCGaCGACCUGCg- -3' miRNA: 3'- -AGUGGCUCUgaaCGUaGUUGGACGag -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 140705 | 0.67 | 0.984519 |
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Target: 5'- cCGCCGcgacccgggaauGGACguuCGUCAACCUGCg- -3' miRNA: 3'- aGUGGC------------UCUGaacGUAGUUGGACGag -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 140750 | 0.73 | 0.795023 |
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Target: 5'- aCGCCGAGAagcUGCAcgcCAACCUGCg- -3' miRNA: 3'- aGUGGCUCUga-ACGUa--GUUGGACGag -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 141600 | 0.67 | 0.986273 |
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Target: 5'- gUCGCCGGGcg--GCucggCGACCgGCUCg -3' miRNA: 3'- -AGUGGCUCugaaCGua--GUUGGaCGAG- -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 147590 | 0.71 | 0.892419 |
|
Target: 5'- aCACCGAGGCgcucGCGgugugCAAUCUGCa- -3' miRNA: 3'- aGUGGCUCUGaa--CGUa----GUUGGACGag -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 155926 | 0.68 | 0.963846 |
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Target: 5'- -aGCCGGGuGCUUGcCGUC-ACCgggGCUCu -3' miRNA: 3'- agUGGCUC-UGAAC-GUAGuUGGa--CGAG- -5' |
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| 10970 | 5' | -51.9 | NC_002794.1 | + | 191505 | 0.67 | 0.980507 |
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Target: 5'- cCACCGAGAggugccagcgcCggGCGUCGGCCcGCg- -3' miRNA: 3'- aGUGGCUCU-----------GaaCGUAGUUGGaCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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