Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10971 | 3' | -54.1 | NC_002794.1 | + | 14437 | 0.65 | 0.983432 |
Target: 5'- gUGAUCUucucgaugcuccgCGGgCGACCGUgucgagcggcgcGCCGCGcUCg -3' miRNA: 3'- -ACUAGA-------------GCCaGCUGGCAa-----------UGGCGC-AG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 48716 | 0.66 | 0.982089 |
Target: 5'- ---aCUCGGUgcgcggaucCGACCGgccgcaaUACCGgGUCg -3' miRNA: 3'- acuaGAGCCA---------GCUGGCa------AUGGCgCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 140807 | 0.66 | 0.980029 |
Target: 5'- cGGUCUaucCGGUaGAUCGcUACCGCG-Cg -3' miRNA: 3'- aCUAGA---GCCAgCUGGCaAUGGCGCaG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 180893 | 0.66 | 0.977799 |
Target: 5'- cGGUCUCGGccgcggacUCGGCCGcggucucGCCGgcgcCGUCg -3' miRNA: 3'- aCUAGAGCC--------AGCUGGCaa-----UGGC----GCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 148625 | 0.66 | 0.977799 |
Target: 5'- aGAUCUgGGUcucCGAUCGcgGCgGCGUg -3' miRNA: 3'- aCUAGAgCCA---GCUGGCaaUGgCGCAg -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 189764 | 0.66 | 0.977799 |
Target: 5'- cGGUUUCGGUgcACCGccaGCCGCGg- -3' miRNA: 3'- aCUAGAGCCAgcUGGCaa-UGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 56309 | 0.66 | 0.977799 |
Target: 5'- cGGUCgCGGUCG-CUGgcgGCCGUGg- -3' miRNA: 3'- aCUAGaGCCAGCuGGCaa-UGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 116902 | 0.66 | 0.977799 |
Target: 5'- -cGUCUcCGG-CGGCCGgu-CCGgCGUCg -3' miRNA: 3'- acUAGA-GCCaGCUGGCaauGGC-GCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 124407 | 0.66 | 0.977799 |
Target: 5'- cGGUCgUCGGggCG-CCGUccGCCGCGgUCu -3' miRNA: 3'- aCUAG-AGCCa-GCuGGCAa-UGGCGC-AG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 121207 | 0.66 | 0.97539 |
Target: 5'- gGGUCgacuUCGGgggCGGCCGccGCCGCuacaGUCg -3' miRNA: 3'- aCUAG----AGCCa--GCUGGCaaUGGCG----CAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 168597 | 0.66 | 0.97539 |
Target: 5'- cGGUUUCGcGUgGACCGUUACUGagaacUCg -3' miRNA: 3'- aCUAGAGC-CAgCUGGCAAUGGCgc---AG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 54131 | 0.66 | 0.975138 |
Target: 5'- cGAUCUuCGGcacguugUUGGCCa--GCCGCGUCc -3' miRNA: 3'- aCUAGA-GCC-------AGCUGGcaaUGGCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 105214 | 0.66 | 0.972795 |
Target: 5'- gUGAUCagGGUCGACagg-GCCGUG-Cg -3' miRNA: 3'- -ACUAGagCCAGCUGgcaaUGGCGCaG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 42065 | 0.66 | 0.972795 |
Target: 5'- aUGAUgUUGGcCGACUG--GCCGCGg- -3' miRNA: 3'- -ACUAgAGCCaGCUGGCaaUGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 36386 | 0.66 | 0.972795 |
Target: 5'- cGAag-CGGUCGACCcagaaaucgACCGCGUa -3' miRNA: 3'- aCUagaGCCAGCUGGcaa------UGGCGCAg -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 51117 | 0.67 | 0.967023 |
Target: 5'- cGcgCUCGGacgUCGACCcuuuugACgGCGUCa -3' miRNA: 3'- aCuaGAGCC---AGCUGGcaa---UGgCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 50340 | 0.67 | 0.966402 |
Target: 5'- uUGggCUCGGUC-ACCGgcuccgccaugACCGCGg- -3' miRNA: 3'- -ACuaGAGCCAGcUGGCaa---------UGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 54230 | 0.67 | 0.965134 |
Target: 5'- -cGUCUCGGaugaagCGGCCgagcgcgcgguccacGgcGCCGCGUCg -3' miRNA: 3'- acUAGAGCCa-----GCUGG---------------CaaUGGCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 131025 | 0.67 | 0.963834 |
Target: 5'- gUGGUCgugCGGcgCGGCCGgcUGCCGCcgauguucGUCg -3' miRNA: 3'- -ACUAGa--GCCa-GCUGGCa-AUGGCG--------CAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 35147 | 0.67 | 0.963834 |
Target: 5'- gGGgcagCUCGuGUCGACCGaggagcACCGCG-Cg -3' miRNA: 3'- aCUa---GAGC-CAGCUGGCaa----UGGCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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