miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 53305 0.76 0.559344
Target:  5'- cGAg--CGGUCGGCCGgcGCCGCGa- -3'
miRNA:   3'- aCUagaGCCAGCUGGCaaUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 44652 0.72 0.794617
Target:  5'- gGAUgUUCGGUCGACaGgu-CCGCGUCc -3'
miRNA:   3'- aCUA-GAGCCAGCUGgCaauGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 154029 0.72 0.803462
Target:  5'- gGAUCaUUGG-CGGCgGUUGCCGUGUa -3'
miRNA:   3'- aCUAG-AGCCaGCUGgCAAUGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 105413 0.71 0.829059
Target:  5'- gGAUCUCGGccuccagggUGGCCGccGCCGCGcCg -3'
miRNA:   3'- aCUAGAGCCa--------GCUGGCaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 157337 0.71 0.845266
Target:  5'- -cGUC-CGGUCGACCGgacgaCGCGUUa -3'
miRNA:   3'- acUAGaGCCAGCUGGCaaug-GCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 148993 0.71 0.853091
Target:  5'- gGGUgCUCGGucggaUCGACUGUUucaACCGgGUCa -3'
miRNA:   3'- aCUA-GAGCC-----AGCUGGCAA---UGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 182444 0.71 0.853091
Target:  5'- gGAUCUCGGUcucggagagcgCGGCgGUgcGCgGCGUCa -3'
miRNA:   3'- aCUAGAGCCA-----------GCUGgCAa-UGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 2727 0.7 0.860722
Target:  5'- cGGUCUUuGG-CGACCGagACCGgGUCc -3'
miRNA:   3'- aCUAGAG-CCaGCUGGCaaUGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 150263 0.7 0.875375
Target:  5'- gUGccgCUCGGUCGACUGacGCCGCa-- -3'
miRNA:   3'- -ACua-GAGCCAGCUGGCaaUGGCGcag -5'
10971 3' -54.1 NC_002794.1 + 85053 0.7 0.875375
Target:  5'- cGcgCUCGa-CGACCGgccacGCCGCGUCu -3'
miRNA:   3'- aCuaGAGCcaGCUGGCaa---UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 11525 0.7 0.875375
Target:  5'- cGAUCgagcugCGGgCGACCGaggACCGCGg- -3'
miRNA:   3'- aCUAGa-----GCCaGCUGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 189563 0.7 0.89576
Target:  5'- cGGUCccgcUCGGUCGGCCGgcccggGCCgGCGcCc -3'
miRNA:   3'- aCUAG----AGCCAGCUGGCaa----UGG-CGCaG- -5'
10971 3' -54.1 NC_002794.1 + 134146 0.69 0.902113
Target:  5'- gGAagCUCGGUCcguguugcuGGCCGUgGCCGCG-Cg -3'
miRNA:   3'- aCUa-GAGCCAG---------CUGGCAaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 189846 0.69 0.902113
Target:  5'- gGGUCUCGGcCGcggaGCCGU--CgGCGUCg -3'
miRNA:   3'- aCUAGAGCCaGC----UGGCAauGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 159782 0.69 0.908239
Target:  5'- cUGAUC-CGGUCGAgCGUUGCggauccauuCGCGa- -3'
miRNA:   3'- -ACUAGaGCCAGCUgGCAAUG---------GCGCag -5'
10971 3' -54.1 NC_002794.1 + 101038 0.69 0.914136
Target:  5'- cGggCgcgGGUCGGCCGcUACUGCGUg -3'
miRNA:   3'- aCuaGag-CCAGCUGGCaAUGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 15057 0.69 0.914136
Target:  5'- cGGUCaUCGGucUCGGCCucUACCGCGa- -3'
miRNA:   3'- aCUAG-AGCC--AGCUGGcaAUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 104255 0.69 0.919802
Target:  5'- uUGAgCUCGGgcagccgcUCGGCCGgcACCGUGcCg -3'
miRNA:   3'- -ACUaGAGCC--------AGCUGGCaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 119901 0.69 0.919802
Target:  5'- gGAUCUUGG-CGGCCGacGCCGgGg- -3'
miRNA:   3'- aCUAGAGCCaGCUGGCaaUGGCgCag -5'
10971 3' -54.1 NC_002794.1 + 156018 0.69 0.919802
Target:  5'- gGGUCUCaugGGUCGcaGCCGU---CGCGUCg -3'
miRNA:   3'- aCUAGAG---CCAGC--UGGCAaugGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.