miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 49577 0.67 0.963834
Target:  5'- cGA-C-CGGUCGACCGgaucccgAUCGCGaUCg -3'
miRNA:   3'- aCUaGaGCCAGCUGGCaa-----UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 40275 0.67 0.963834
Target:  5'- gUGAUUUCgGGUCG-CCGcua-CGCGUCc -3'
miRNA:   3'- -ACUAGAG-CCAGCuGGCaaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 185185 0.67 0.960435
Target:  5'- cGGUCggcgCGGUCGGCgCGgucAUCGCGg- -3'
miRNA:   3'- aCUAGa---GCCAGCUG-GCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 121313 0.67 0.960435
Target:  5'- aGAUCggCGGUUGGCCcucgaGgcGCCGCG-Cg -3'
miRNA:   3'- aCUAGa-GCCAGCUGG-----CaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 115082 0.67 0.957928
Target:  5'- cGGcCUCGG-CGGCCGcccgcagccgcgcguCCGCGUCg -3'
miRNA:   3'- aCUaGAGCCaGCUGGCaau------------GGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 154327 0.67 0.956822
Target:  5'- cGGcgUCGGUCGucCCGggUGCCGCGg- -3'
miRNA:   3'- aCUagAGCCAGCu-GGCa-AUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 118253 0.67 0.956822
Target:  5'- cGggCUggaGGUCGGCCGggGCgGCGg- -3'
miRNA:   3'- aCuaGAg--CCAGCUGGCaaUGgCGCag -5'
10971 3' -54.1 NC_002794.1 + 67015 0.68 0.95299
Target:  5'- -aGUCcggCGGcggCGGCCGgcucccGCCGCGUCg -3'
miRNA:   3'- acUAGa--GCCa--GCUGGCaa----UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 18245 0.68 0.948936
Target:  5'- aGcgCgcgCGGcCGACCGgcgACCGCGa- -3'
miRNA:   3'- aCuaGa--GCCaGCUGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 117197 0.68 0.948936
Target:  5'- aGAUCggcgUCGGgcccgggCGGCUccgGCCGCGUCa -3'
miRNA:   3'- aCUAG----AGCCa------GCUGGcaaUGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 67215 0.68 0.944656
Target:  5'- gUGcgCUCGG-CG-CCGggcggcuaACCGCGUCu -3'
miRNA:   3'- -ACuaGAGCCaGCuGGCaa------UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 169465 0.68 0.940148
Target:  5'- gUGggUUCGGggCGACCGUgu-CGCGUUg -3'
miRNA:   3'- -ACuaGAGCCa-GCUGGCAaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 105798 0.68 0.940148
Target:  5'- cGGUCUCGGagacgGACCGaaagcgcgACCGgGUCg -3'
miRNA:   3'- aCUAGAGCCag---CUGGCaa------UGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 130610 0.68 0.935409
Target:  5'- cGAUCgugggcCGGUUGACgGUguuCgGCGUCg -3'
miRNA:   3'- aCUAGa-----GCCAGCUGgCAau-GgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 81978 0.68 0.935409
Target:  5'- --uUCcCGGacgcgCGACCGUUGCC-CGUCg -3'
miRNA:   3'- acuAGaGCCa----GCUGGCAAUGGcGCAG- -5'
10971 3' -54.1 NC_002794.1 + 116689 0.68 0.935409
Target:  5'- cGAUC-CGGgagcCGGCCuccagcACCGCGUCg -3'
miRNA:   3'- aCUAGaGCCa---GCUGGcaa---UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 105722 0.68 0.930439
Target:  5'- cGAUCgCGG-CGGCCGUcgggAaaGCGUCg -3'
miRNA:   3'- aCUAGaGCCaGCUGGCAa---UggCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 182803 0.68 0.930439
Target:  5'- cGGUCgCGGUCGACagcuCGUccaGCCGCGg- -3'
miRNA:   3'- aCUAGaGCCAGCUG----GCAa--UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 104255 0.69 0.919802
Target:  5'- uUGAgCUCGGgcagccgcUCGGCCGgcACCGUGcCg -3'
miRNA:   3'- -ACUaGAGCC--------AGCUGGCaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 119901 0.69 0.919802
Target:  5'- gGAUCUUGG-CGGCCGacGCCGgGg- -3'
miRNA:   3'- aCUAGAGCCaGCUGGCaaUGGCgCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.