Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10971 | 3' | -54.1 | NC_002794.1 | + | 119901 | 0.69 | 0.919802 |
Target: 5'- gGAUCUUGG-CGGCCGacGCCGgGg- -3' miRNA: 3'- aCUAGAGCCaGCUGGCaaUGGCgCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 101038 | 0.69 | 0.914136 |
Target: 5'- cGggCgcgGGUCGGCCGcUACUGCGUg -3' miRNA: 3'- aCuaGag-CCAGCUGGCaAUGGCGCAg -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 15057 | 0.69 | 0.914136 |
Target: 5'- cGGUCaUCGGucUCGGCCucUACCGCGa- -3' miRNA: 3'- aCUAG-AGCC--AGCUGGcaAUGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 159782 | 0.69 | 0.908239 |
Target: 5'- cUGAUC-CGGUCGAgCGUUGCggauccauuCGCGa- -3' miRNA: 3'- -ACUAGaGCCAGCUgGCAAUG---------GCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 134146 | 0.69 | 0.902113 |
Target: 5'- gGAagCUCGGUCcguguugcuGGCCGUgGCCGCG-Cg -3' miRNA: 3'- aCUa-GAGCCAG---------CUGGCAaUGGCGCaG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 189846 | 0.69 | 0.902113 |
Target: 5'- gGGUCUCGGcCGcggaGCCGU--CgGCGUCg -3' miRNA: 3'- aCUAGAGCCaGC----UGGCAauGgCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 189563 | 0.7 | 0.89576 |
Target: 5'- cGGUCccgcUCGGUCGGCCGgcccggGCCgGCGcCc -3' miRNA: 3'- aCUAG----AGCCAGCUGGCaa----UGG-CGCaG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 11525 | 0.7 | 0.875375 |
Target: 5'- cGAUCgagcugCGGgCGACCGaggACCGCGg- -3' miRNA: 3'- aCUAGa-----GCCaGCUGGCaa-UGGCGCag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 85053 | 0.7 | 0.875375 |
Target: 5'- cGcgCUCGa-CGACCGgccacGCCGCGUCu -3' miRNA: 3'- aCuaGAGCcaGCUGGCaa---UGGCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 150263 | 0.7 | 0.875375 |
Target: 5'- gUGccgCUCGGUCGACUGacGCCGCa-- -3' miRNA: 3'- -ACua-GAGCCAGCUGGCaaUGGCGcag -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 2727 | 0.7 | 0.860722 |
Target: 5'- cGGUCUUuGG-CGACCGagACCGgGUCc -3' miRNA: 3'- aCUAGAG-CCaGCUGGCaaUGGCgCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 148993 | 0.71 | 0.853091 |
Target: 5'- gGGUgCUCGGucggaUCGACUGUUucaACCGgGUCa -3' miRNA: 3'- aCUA-GAGCC-----AGCUGGCAA---UGGCgCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 182444 | 0.71 | 0.853091 |
Target: 5'- gGAUCUCGGUcucggagagcgCGGCgGUgcGCgGCGUCa -3' miRNA: 3'- aCUAGAGCCA-----------GCUGgCAa-UGgCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 157337 | 0.71 | 0.845266 |
Target: 5'- -cGUC-CGGUCGACCGgacgaCGCGUUa -3' miRNA: 3'- acUAGaGCCAGCUGGCaaug-GCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 105413 | 0.71 | 0.829059 |
Target: 5'- gGAUCUCGGccuccagggUGGCCGccGCCGCGcCg -3' miRNA: 3'- aCUAGAGCCa--------GCUGGCaaUGGCGCaG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 154029 | 0.72 | 0.803462 |
Target: 5'- gGAUCaUUGG-CGGCgGUUGCCGUGUa -3' miRNA: 3'- aCUAG-AGCCaGCUGgCAAUGGCGCAg -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 44652 | 0.72 | 0.794617 |
Target: 5'- gGAUgUUCGGUCGACaGgu-CCGCGUCc -3' miRNA: 3'- aCUA-GAGCCAGCUGgCaauGGCGCAG- -5' |
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10971 | 3' | -54.1 | NC_002794.1 | + | 53305 | 0.76 | 0.559344 |
Target: 5'- cGAg--CGGUCGGCCGgcGCCGCGa- -3' miRNA: 3'- aCUagaGCCAGCUGGCaaUGGCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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