miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 2727 0.7 0.860722
Target:  5'- cGGUCUUuGG-CGACCGagACCGgGUCc -3'
miRNA:   3'- aCUAGAG-CCaGCUGGCaaUGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 11525 0.7 0.875375
Target:  5'- cGAUCgagcugCGGgCGACCGaggACCGCGg- -3'
miRNA:   3'- aCUAGa-----GCCaGCUGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 14437 0.65 0.983432
Target:  5'- gUGAUCUucucgaugcuccgCGGgCGACCGUgucgagcggcgcGCCGCGcUCg -3'
miRNA:   3'- -ACUAGA-------------GCCaGCUGGCAa-----------UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 15057 0.69 0.914136
Target:  5'- cGGUCaUCGGucUCGGCCucUACCGCGa- -3'
miRNA:   3'- aCUAG-AGCC--AGCUGGcaAUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 18245 0.68 0.948936
Target:  5'- aGcgCgcgCGGcCGACCGgcgACCGCGa- -3'
miRNA:   3'- aCuaGa--GCCaGCUGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 35147 0.67 0.963834
Target:  5'- gGGgcagCUCGuGUCGACCGaggagcACCGCG-Cg -3'
miRNA:   3'- aCUa---GAGC-CAGCUGGCaa----UGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 36386 0.66 0.972795
Target:  5'- cGAag-CGGUCGACCcagaaaucgACCGCGUa -3'
miRNA:   3'- aCUagaGCCAGCUGGcaa------UGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 40275 0.67 0.963834
Target:  5'- gUGAUUUCgGGUCG-CCGcua-CGCGUCc -3'
miRNA:   3'- -ACUAGAG-CCAGCuGGCaaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 42065 0.66 0.972795
Target:  5'- aUGAUgUUGGcCGACUG--GCCGCGg- -3'
miRNA:   3'- -ACUAgAGCCaGCUGGCaaUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 44652 0.72 0.794617
Target:  5'- gGAUgUUCGGUCGACaGgu-CCGCGUCc -3'
miRNA:   3'- aCUA-GAGCCAGCUGgCaauGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 48716 0.66 0.982089
Target:  5'- ---aCUCGGUgcgcggaucCGACCGgccgcaaUACCGgGUCg -3'
miRNA:   3'- acuaGAGCCA---------GCUGGCa------AUGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 49577 0.67 0.963834
Target:  5'- cGA-C-CGGUCGACCGgaucccgAUCGCGaUCg -3'
miRNA:   3'- aCUaGaGCCAGCUGGCaa-----UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 50340 0.67 0.966402
Target:  5'- uUGggCUCGGUC-ACCGgcuccgccaugACCGCGg- -3'
miRNA:   3'- -ACuaGAGCCAGcUGGCaa---------UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 51117 0.67 0.967023
Target:  5'- cGcgCUCGGacgUCGACCcuuuugACgGCGUCa -3'
miRNA:   3'- aCuaGAGCC---AGCUGGcaa---UGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 53305 0.76 0.559344
Target:  5'- cGAg--CGGUCGGCCGgcGCCGCGa- -3'
miRNA:   3'- aCUagaGCCAGCUGGCaaUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 54131 0.66 0.975138
Target:  5'- cGAUCUuCGGcacguugUUGGCCa--GCCGCGUCc -3'
miRNA:   3'- aCUAGA-GCC-------AGCUGGcaaUGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 54230 0.67 0.965134
Target:  5'- -cGUCUCGGaugaagCGGCCgagcgcgcgguccacGgcGCCGCGUCg -3'
miRNA:   3'- acUAGAGCCa-----GCUGG---------------CaaUGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 56309 0.66 0.977799
Target:  5'- cGGUCgCGGUCG-CUGgcgGCCGUGg- -3'
miRNA:   3'- aCUAGaGCCAGCuGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 67015 0.68 0.95299
Target:  5'- -aGUCcggCGGcggCGGCCGgcucccGCCGCGUCg -3'
miRNA:   3'- acUAGa--GCCa--GCUGGCaa----UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 67215 0.68 0.944656
Target:  5'- gUGcgCUCGG-CG-CCGggcggcuaACCGCGUCu -3'
miRNA:   3'- -ACuaGAGCCaGCuGGCaa------UGGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.