miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 81978 0.68 0.935409
Target:  5'- --uUCcCGGacgcgCGACCGUUGCC-CGUCg -3'
miRNA:   3'- acuAGaGCCa----GCUGGCAAUGGcGCAG- -5'
10971 3' -54.1 NC_002794.1 + 85053 0.7 0.875375
Target:  5'- cGcgCUCGa-CGACCGgccacGCCGCGUCu -3'
miRNA:   3'- aCuaGAGCcaGCUGGCaa---UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 101038 0.69 0.914136
Target:  5'- cGggCgcgGGUCGGCCGcUACUGCGUg -3'
miRNA:   3'- aCuaGag-CCAGCUGGCaAUGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 104255 0.69 0.919802
Target:  5'- uUGAgCUCGGgcagccgcUCGGCCGgcACCGUGcCg -3'
miRNA:   3'- -ACUaGAGCC--------AGCUGGCaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 105214 0.66 0.972795
Target:  5'- gUGAUCagGGUCGACagg-GCCGUG-Cg -3'
miRNA:   3'- -ACUAGagCCAGCUGgcaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 105413 0.71 0.829059
Target:  5'- gGAUCUCGGccuccagggUGGCCGccGCCGCGcCg -3'
miRNA:   3'- aCUAGAGCCa--------GCUGGCaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 105722 0.68 0.930439
Target:  5'- cGAUCgCGG-CGGCCGUcgggAaaGCGUCg -3'
miRNA:   3'- aCUAGaGCCaGCUGGCAa---UggCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 105798 0.68 0.940148
Target:  5'- cGGUCUCGGagacgGACCGaaagcgcgACCGgGUCg -3'
miRNA:   3'- aCUAGAGCCag---CUGGCaa------UGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 115082 0.67 0.957928
Target:  5'- cGGcCUCGG-CGGCCGcccgcagccgcgcguCCGCGUCg -3'
miRNA:   3'- aCUaGAGCCaGCUGGCaau------------GGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 116689 0.68 0.935409
Target:  5'- cGAUC-CGGgagcCGGCCuccagcACCGCGUCg -3'
miRNA:   3'- aCUAGaGCCa---GCUGGcaa---UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 116902 0.66 0.977799
Target:  5'- -cGUCUcCGG-CGGCCGgu-CCGgCGUCg -3'
miRNA:   3'- acUAGA-GCCaGCUGGCaauGGC-GCAG- -5'
10971 3' -54.1 NC_002794.1 + 117197 0.68 0.948936
Target:  5'- aGAUCggcgUCGGgcccgggCGGCUccgGCCGCGUCa -3'
miRNA:   3'- aCUAG----AGCCa------GCUGGcaaUGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 118253 0.67 0.956822
Target:  5'- cGggCUggaGGUCGGCCGggGCgGCGg- -3'
miRNA:   3'- aCuaGAg--CCAGCUGGCaaUGgCGCag -5'
10971 3' -54.1 NC_002794.1 + 119901 0.69 0.919802
Target:  5'- gGAUCUUGG-CGGCCGacGCCGgGg- -3'
miRNA:   3'- aCUAGAGCCaGCUGGCaaUGGCgCag -5'
10971 3' -54.1 NC_002794.1 + 121207 0.66 0.97539
Target:  5'- gGGUCgacuUCGGgggCGGCCGccGCCGCuacaGUCg -3'
miRNA:   3'- aCUAG----AGCCa--GCUGGCaaUGGCG----CAG- -5'
10971 3' -54.1 NC_002794.1 + 121313 0.67 0.960435
Target:  5'- aGAUCggCGGUUGGCCcucgaGgcGCCGCG-Cg -3'
miRNA:   3'- aCUAGa-GCCAGCUGG-----CaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 124407 0.66 0.977799
Target:  5'- cGGUCgUCGGggCG-CCGUccGCCGCGgUCu -3'
miRNA:   3'- aCUAG-AGCCa-GCuGGCAa-UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 130610 0.68 0.935409
Target:  5'- cGAUCgugggcCGGUUGACgGUguuCgGCGUCg -3'
miRNA:   3'- aCUAGa-----GCCAGCUGgCAau-GgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 131025 0.67 0.963834
Target:  5'- gUGGUCgugCGGcgCGGCCGgcUGCCGCcgauguucGUCg -3'
miRNA:   3'- -ACUAGa--GCCa-GCUGGCa-AUGGCG--------CAG- -5'
10971 3' -54.1 NC_002794.1 + 134146 0.69 0.902113
Target:  5'- gGAagCUCGGUCcguguugcuGGCCGUgGCCGCG-Cg -3'
miRNA:   3'- aCUa-GAGCCAG---------CUGGCAaUGGCGCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.