miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 189846 0.69 0.902113
Target:  5'- gGGUCUCGGcCGcggaGCCGU--CgGCGUCg -3'
miRNA:   3'- aCUAGAGCCaGC----UGGCAauGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 189764 0.66 0.977799
Target:  5'- cGGUUUCGGUgcACCGccaGCCGCGg- -3'
miRNA:   3'- aCUAGAGCCAgcUGGCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 189563 0.7 0.89576
Target:  5'- cGGUCccgcUCGGUCGGCCGgcccggGCCgGCGcCc -3'
miRNA:   3'- aCUAG----AGCCAGCUGGCaa----UGG-CGCaG- -5'
10971 3' -54.1 NC_002794.1 + 185185 0.67 0.960435
Target:  5'- cGGUCggcgCGGUCGGCgCGgucAUCGCGg- -3'
miRNA:   3'- aCUAGa---GCCAGCUG-GCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 182803 0.68 0.930439
Target:  5'- cGGUCgCGGUCGACagcuCGUccaGCCGCGg- -3'
miRNA:   3'- aCUAGaGCCAGCUG----GCAa--UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 182444 0.71 0.853091
Target:  5'- gGAUCUCGGUcucggagagcgCGGCgGUgcGCgGCGUCa -3'
miRNA:   3'- aCUAGAGCCA-----------GCUGgCAa-UGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 180893 0.66 0.977799
Target:  5'- cGGUCUCGGccgcggacUCGGCCGcggucucGCCGgcgcCGUCg -3'
miRNA:   3'- aCUAGAGCC--------AGCUGGCaa-----UGGC----GCAG- -5'
10971 3' -54.1 NC_002794.1 + 169465 0.68 0.940148
Target:  5'- gUGggUUCGGggCGACCGUgu-CGCGUUg -3'
miRNA:   3'- -ACuaGAGCCa-GCUGGCAaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 168597 0.66 0.97539
Target:  5'- cGGUUUCGcGUgGACCGUUACUGagaacUCg -3'
miRNA:   3'- aCUAGAGC-CAgCUGGCAAUGGCgc---AG- -5'
10971 3' -54.1 NC_002794.1 + 159782 0.69 0.908239
Target:  5'- cUGAUC-CGGUCGAgCGUUGCggauccauuCGCGa- -3'
miRNA:   3'- -ACUAGaGCCAGCUgGCAAUG---------GCGCag -5'
10971 3' -54.1 NC_002794.1 + 157337 0.71 0.845266
Target:  5'- -cGUC-CGGUCGACCGgacgaCGCGUUa -3'
miRNA:   3'- acUAGaGCCAGCUGGCaaug-GCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 156018 0.69 0.919802
Target:  5'- gGGUCUCaugGGUCGcaGCCGU---CGCGUCg -3'
miRNA:   3'- aCUAGAG---CCAGC--UGGCAaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 154327 0.67 0.956822
Target:  5'- cGGcgUCGGUCGucCCGggUGCCGCGg- -3'
miRNA:   3'- aCUagAGCCAGCu-GGCa-AUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 154029 0.72 0.803462
Target:  5'- gGAUCaUUGG-CGGCgGUUGCCGUGUa -3'
miRNA:   3'- aCUAG-AGCCaGCUGgCAAUGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 150263 0.7 0.875375
Target:  5'- gUGccgCUCGGUCGACUGacGCCGCa-- -3'
miRNA:   3'- -ACua-GAGCCAGCUGGCaaUGGCGcag -5'
10971 3' -54.1 NC_002794.1 + 148993 0.71 0.853091
Target:  5'- gGGUgCUCGGucggaUCGACUGUUucaACCGgGUCa -3'
miRNA:   3'- aCUA-GAGCC-----AGCUGGCAA---UGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 148625 0.66 0.977799
Target:  5'- aGAUCUgGGUcucCGAUCGcgGCgGCGUg -3'
miRNA:   3'- aCUAGAgCCA---GCUGGCaaUGgCGCAg -5'
10971 3' -54.1 NC_002794.1 + 140807 0.66 0.980029
Target:  5'- cGGUCUaucCGGUaGAUCGcUACCGCG-Cg -3'
miRNA:   3'- aCUAGA---GCCAgCUGGCaAUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 134146 0.69 0.902113
Target:  5'- gGAagCUCGGUCcguguugcuGGCCGUgGCCGCG-Cg -3'
miRNA:   3'- aCUa-GAGCCAG---------CUGGCAaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 131025 0.67 0.963834
Target:  5'- gUGGUCgugCGGcgCGGCCGgcUGCCGCcgauguucGUCg -3'
miRNA:   3'- -ACUAGa--GCCa-GCUGGCa-AUGGCG--------CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.