miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 3' -54.1 NC_002794.1 + 124407 0.66 0.977799
Target:  5'- cGGUCgUCGGggCG-CCGUccGCCGCGgUCu -3'
miRNA:   3'- aCUAG-AGCCa-GCuGGCAa-UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 48716 0.66 0.982089
Target:  5'- ---aCUCGGUgcgcggaucCGACCGgccgcaaUACCGgGUCg -3'
miRNA:   3'- acuaGAGCCA---------GCUGGCa------AUGGCgCAG- -5'
10971 3' -54.1 NC_002794.1 + 42065 0.66 0.972795
Target:  5'- aUGAUgUUGGcCGACUG--GCCGCGg- -3'
miRNA:   3'- -ACUAgAGCCaGCUGGCaaUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 36386 0.66 0.972795
Target:  5'- cGAag-CGGUCGACCcagaaaucgACCGCGUa -3'
miRNA:   3'- aCUagaGCCAGCUGGcaa------UGGCGCAg -5'
10971 3' -54.1 NC_002794.1 + 51117 0.67 0.967023
Target:  5'- cGcgCUCGGacgUCGACCcuuuugACgGCGUCa -3'
miRNA:   3'- aCuaGAGCC---AGCUGGcaa---UGgCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 67015 0.68 0.95299
Target:  5'- -aGUCcggCGGcggCGGCCGgcucccGCCGCGUCg -3'
miRNA:   3'- acUAGa--GCCa--GCUGGCaa----UGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 154327 0.67 0.956822
Target:  5'- cGGcgUCGGUCGucCCGggUGCCGCGg- -3'
miRNA:   3'- aCUagAGCCAGCu-GGCa-AUGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 118253 0.67 0.956822
Target:  5'- cGggCUggaGGUCGGCCGggGCgGCGg- -3'
miRNA:   3'- aCuaGAg--CCAGCUGGCaaUGgCGCag -5'
10971 3' -54.1 NC_002794.1 + 115082 0.67 0.957928
Target:  5'- cGGcCUCGG-CGGCCGcccgcagccgcgcguCCGCGUCg -3'
miRNA:   3'- aCUaGAGCCaGCUGGCaau------------GGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 121313 0.67 0.960435
Target:  5'- aGAUCggCGGUUGGCCcucgaGgcGCCGCG-Cg -3'
miRNA:   3'- aCUAGa-GCCAGCUGG-----CaaUGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 185185 0.67 0.960435
Target:  5'- cGGUCggcgCGGUCGGCgCGgucAUCGCGg- -3'
miRNA:   3'- aCUAGa---GCCAGCUG-GCaa-UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 54230 0.67 0.965134
Target:  5'- -cGUCUCGGaugaagCGGCCgagcgcgcgguccacGgcGCCGCGUCg -3'
miRNA:   3'- acUAGAGCCa-----GCUGG---------------CaaUGGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 35147 0.67 0.963834
Target:  5'- gGGgcagCUCGuGUCGACCGaggagcACCGCG-Cg -3'
miRNA:   3'- aCUa---GAGC-CAGCUGGCaa----UGGCGCaG- -5'
10971 3' -54.1 NC_002794.1 + 131025 0.67 0.963834
Target:  5'- gUGGUCgugCGGcgCGGCCGgcUGCCGCcgauguucGUCg -3'
miRNA:   3'- -ACUAGa--GCCa-GCUGGCa-AUGGCG--------CAG- -5'
10971 3' -54.1 NC_002794.1 + 49577 0.67 0.963834
Target:  5'- cGA-C-CGGUCGACCGgaucccgAUCGCGaUCg -3'
miRNA:   3'- aCUaGaGCCAGCUGGCaa-----UGGCGC-AG- -5'
10971 3' -54.1 NC_002794.1 + 40275 0.67 0.963834
Target:  5'- gUGAUUUCgGGUCG-CCGcua-CGCGUCc -3'
miRNA:   3'- -ACUAGAG-CCAGCuGGCaaugGCGCAG- -5'
10971 3' -54.1 NC_002794.1 + 50340 0.67 0.966402
Target:  5'- uUGggCUCGGUC-ACCGgcuccgccaugACCGCGg- -3'
miRNA:   3'- -ACuaGAGCCAGcUGGCaa---------UGGCGCag -5'
10971 3' -54.1 NC_002794.1 + 14437 0.65 0.983432
Target:  5'- gUGAUCUucucgaugcuccgCGGgCGACCGUgucgagcggcgcGCCGCGcUCg -3'
miRNA:   3'- -ACUAGA-------------GCCaGCUGGCAa-----------UGGCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.