miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 115580 0.66 0.996707
Target:  5'- cGAACGGGAC-GUAGCgGCUGcGGUCg -3'
miRNA:   3'- cUUUGUUUUGuCGUCGgCGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 30232 0.66 0.996707
Target:  5'- -------uACGGCAGCCGCauCGGGUUc -3'
miRNA:   3'- cuuuguuuUGUCGUCGGCG--GCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 41682 0.66 0.996707
Target:  5'- --cGCAGGAgcGCccGGaCCGCCGGAUCg -3'
miRNA:   3'- cuuUGUUUUguCG--UC-GGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 121376 0.66 0.996707
Target:  5'- ---cCGAGcCGGCcGCCGCCGGGa-- -3'
miRNA:   3'- cuuuGUUUuGUCGuCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 188133 0.66 0.996707
Target:  5'- gGAGAUccAACAGCucuuccuccaGGUCgGCCGGGUCg -3'
miRNA:   3'- -CUUUGuuUUGUCG----------UCGG-CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 121031 0.66 0.996707
Target:  5'- aGAGGCcGGAgAGCGGCgCGUCGGGc-- -3'
miRNA:   3'- -CUUUGuUUUgUCGUCG-GCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 117836 0.66 0.996707
Target:  5'- --cGCAGAGCAGCGGCa--CGGAg-- -3'
miRNA:   3'- cuuUGUUUUGUCGUCGgcgGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 44487 0.66 0.996707
Target:  5'- cGAAACAGAgacguugucucACGGCGGCCcagaCCGGGc-- -3'
miRNA:   3'- -CUUUGUUU-----------UGUCGUCGGc---GGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 16300 0.66 0.996707
Target:  5'- -uAGCcuGGCGGCcgcGGCCGgCUGGAUCc -3'
miRNA:   3'- cuUUGuuUUGUCG---UCGGC-GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 130261 0.66 0.996653
Target:  5'- gGGAACAgcucgaaGAGCGGUugAGCCGCCgcucgcucccGGGUCc -3'
miRNA:   3'- -CUUUGU-------UUUGUCG--UCGGCGG----------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 70534 0.66 0.99637
Target:  5'- -uAAUGAAACAGCAGCCgaucgugcgccucgaGCCGcuccaGAUCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGG---------------CGGC-----CUAGa -5'
10971 5' -50.8 NC_002794.1 + 147065 0.66 0.996129
Target:  5'- aGGACGGAGCcGCGGgCGCCcGGUCc -3'
miRNA:   3'- cUUUGUUUUGuCGUCgGCGGcCUAGa -5'
10971 5' -50.8 NC_002794.1 + 33779 0.66 0.996129
Target:  5'- uGAAGCAcGACAGCcuguGCCGCCa----- -3'
miRNA:   3'- -CUUUGUuUUGUCGu---CGGCGGccuaga -5'
10971 5' -50.8 NC_002794.1 + 88125 0.66 0.996129
Target:  5'- -cAGCAc-ACGGCAGCuugCGCCGGAa-- -3'
miRNA:   3'- cuUUGUuuUGUCGUCG---GCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 135585 0.66 0.996129
Target:  5'- gGAAACGucGCcGgGGuCCGUCGGGUCg -3'
miRNA:   3'- -CUUUGUuuUGuCgUC-GGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 38493 0.66 0.996067
Target:  5'- gGAAGCGcgGCGGCGccggucGCCGCCGccuccgcGAUCc -3'
miRNA:   3'- -CUUUGUuuUGUCGU------CGGCGGC-------CUAGa -5'
10971 5' -50.8 NC_002794.1 + 49014 0.66 0.99547
Target:  5'- --cGCGccGCGGCGGCCGCgGcGUCg -3'
miRNA:   3'- cuuUGUuuUGUCGUCGGCGgCcUAGa -5'
10971 5' -50.8 NC_002794.1 + 37730 0.66 0.99547
Target:  5'- --cGCGAGcgGCGGC-GCCGCCGGcggCg -3'
miRNA:   3'- cuuUGUUU--UGUCGuCGGCGGCCua-Ga -5'
10971 5' -50.8 NC_002794.1 + 192001 0.66 0.99547
Target:  5'- cGGGACGGuAGCGGCGGUgGCCGcGG-CUg -3'
miRNA:   3'- -CUUUGUU-UUGUCGUCGgCGGC-CUaGA- -5'
10971 5' -50.8 NC_002794.1 + 145996 0.66 0.99547
Target:  5'- ---cCAGAACGGCcGCCgggGCCGGAg-- -3'
miRNA:   3'- cuuuGUUUUGUCGuCGG---CGGCCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.