miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 117836 0.66 0.996707
Target:  5'- --cGCAGAGCAGCGGCa--CGGAg-- -3'
miRNA:   3'- cuuUGUUUUGUCGUCGgcgGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 121031 0.66 0.996707
Target:  5'- aGAGGCcGGAgAGCGGCgCGUCGGGc-- -3'
miRNA:   3'- -CUUUGuUUUgUCGUCG-GCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 188133 0.66 0.996707
Target:  5'- gGAGAUccAACAGCucuuccuccaGGUCgGCCGGGUCg -3'
miRNA:   3'- -CUUUGuuUUGUCG----------UCGG-CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 121376 0.66 0.996707
Target:  5'- ---cCGAGcCGGCcGCCGCCGGGa-- -3'
miRNA:   3'- cuuuGUUUuGUCGuCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 41682 0.66 0.996707
Target:  5'- --cGCAGGAgcGCccGGaCCGCCGGAUCg -3'
miRNA:   3'- cuuUGUUUUguCG--UC-GGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 30232 0.66 0.996707
Target:  5'- -------uACGGCAGCCGCauCGGGUUc -3'
miRNA:   3'- cuuuguuuUGUCGUCGGCG--GCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 130261 0.66 0.996653
Target:  5'- gGGAACAgcucgaaGAGCGGUugAGCCGCCgcucgcucccGGGUCc -3'
miRNA:   3'- -CUUUGU-------UUUGUCG--UCGGCGG----------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 38493 0.66 0.996067
Target:  5'- gGAAGCGcgGCGGCGccggucGCCGCCGccuccgcGAUCc -3'
miRNA:   3'- -CUUUGUuuUGUCGU------CGGCGGC-------CUAGa -5'
10971 5' -50.8 NC_002794.1 + 190667 0.66 0.99547
Target:  5'- --cGCGcccGCcGC-GCCGCCGGGUCUc -3'
miRNA:   3'- cuuUGUuu-UGuCGuCGGCGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 88125 0.66 0.996129
Target:  5'- -cAGCAc-ACGGCAGCuugCGCCGGAa-- -3'
miRNA:   3'- cuUUGUuuUGUCGUCG---GCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 135585 0.66 0.996129
Target:  5'- gGAAACGucGCcGgGGuCCGUCGGGUCg -3'
miRNA:   3'- -CUUUGUuuUGuCgUC-GGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 147065 0.66 0.996129
Target:  5'- aGGACGGAGCcGCGGgCGCCcGGUCc -3'
miRNA:   3'- cUUUGUUUUGuCGUCgGCGGcCUAGa -5'
10971 5' -50.8 NC_002794.1 + 70534 0.66 0.99637
Target:  5'- -uAAUGAAACAGCAGCCgaucgugcgccucgaGCCGcuccaGAUCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGG---------------CGGC-----CUAGa -5'
10971 5' -50.8 NC_002794.1 + 16300 0.66 0.996707
Target:  5'- -uAGCcuGGCGGCcgcGGCCGgCUGGAUCc -3'
miRNA:   3'- cuUUGuuUUGUCG---UCGGC-GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 188770 0.67 0.992928
Target:  5'- uGGAACAGcccggugcAGCGGUAGCgGCCGGc--- -3'
miRNA:   3'- -CUUUGUU--------UUGUCGUCGgCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 42199 0.67 0.992928
Target:  5'- ---cCGAAACucGCcGCCGCCGG-UCUg -3'
miRNA:   3'- cuuuGUUUUGu-CGuCGGCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 19460 0.67 0.992928
Target:  5'- cGAGCGGcggcGGCGGCGGgacCCGCCGG-UCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUC---GGCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 179537 0.67 0.992928
Target:  5'- -cGACGAcGGCGGUAGCC-CCGcGGUCa -3'
miRNA:   3'- cuUUGUU-UUGUCGUCGGcGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 44721 0.67 0.992928
Target:  5'- -cGGCGAcguCGGCcggcGCCGCCGGAgggCUa -3'
miRNA:   3'- cuUUGUUuu-GUCGu---CGGCGGCCUa--GA- -5'
10971 5' -50.8 NC_002794.1 + 41843 0.67 0.992928
Target:  5'- cGGGuCGAucAGCAGCcccaGGCCGCCGGGc-- -3'
miRNA:   3'- -CUUuGUU--UUGUCG----UCGGCGGCCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.