miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 144889 0.67 0.987896
Target:  5'- cGggGCGAGACGcucGC-GCCGCUGGGc-- -3'
miRNA:   3'- -CuuUGUUUUGU---CGuCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 30087 0.67 0.988498
Target:  5'- -cGACGAGGCGcGCGGCCGgucccgacccaccgcCCGGGUUUu -3'
miRNA:   3'- cuUUGUUUUGU-CGUCGGC---------------GGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 118268 0.67 0.987896
Target:  5'- ---cCGGGGCGGCGG-CGCCGGcGUCg -3'
miRNA:   3'- cuuuGUUUUGUCGUCgGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 2603 0.67 0.992928
Target:  5'- cAAGCAugGCAccuaccCGGCCGCCGGcgCg -3'
miRNA:   3'- cUUUGUuuUGUc-----GUCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 142788 0.67 0.992928
Target:  5'- --uACGGcGCGuGCAGCCgcaguucgGCCGGGUCg -3'
miRNA:   3'- cuuUGUUuUGU-CGUCGG--------CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 62086 0.67 0.992928
Target:  5'- -cGACGAcggcGAC-GCGGCgCGCCGGAcggUCUg -3'
miRNA:   3'- cuUUGUU----UUGuCGUCG-GCGGCCU---AGA- -5'
10971 5' -50.8 NC_002794.1 + 44721 0.67 0.992928
Target:  5'- -cGGCGAcguCGGCcggcGCCGCCGGAgggCUa -3'
miRNA:   3'- cuUUGUUuu-GUCGu---CGGCGGCCUa--GA- -5'
10971 5' -50.8 NC_002794.1 + 179537 0.67 0.992928
Target:  5'- -cGACGAcGGCGGUAGCC-CCGcGGUCa -3'
miRNA:   3'- cuUUGUU-UUGUCGUCGGcGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 19460 0.67 0.992928
Target:  5'- cGAGCGGcggcGGCGGCGGgacCCGCCGG-UCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUC---GGCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 42199 0.67 0.992928
Target:  5'- ---cCGAAACucGCcGCCGCCGG-UCUg -3'
miRNA:   3'- cuuuGUUUUGu-CGuCGGCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 188770 0.67 0.992928
Target:  5'- uGGAACAGcccggugcAGCGGUAGCgGCCGGc--- -3'
miRNA:   3'- -CUUUGUU--------UUGUCGUCGgCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 41843 0.67 0.992928
Target:  5'- cGGGuCGAucAGCAGCcccaGGCCGCCGGGc-- -3'
miRNA:   3'- -CUUuGUU--UUGUCG----UCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 102188 0.67 0.992928
Target:  5'- -cGGCGAGGaccuGGCGGCCGCCGuGAc-- -3'
miRNA:   3'- cuUUGUUUUg---UCGUCGGCGGC-CUaga -5'
10971 5' -50.8 NC_002794.1 + 127512 0.67 0.992928
Target:  5'- aGGAGCu--GgGGCuguGCCGCCGcGAUCc -3'
miRNA:   3'- -CUUUGuuuUgUCGu--CGGCGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 145735 0.68 0.982576
Target:  5'- ----gGAGGCGGCGG-CGCCGGcAUCg -3'
miRNA:   3'- cuuugUUUUGUCGUCgGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 147038 0.68 0.982576
Target:  5'- aGGACGAAGCcGuCGGCgGCCGG-UCUa -3'
miRNA:   3'- cUUUGUUUUGuC-GUCGgCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 36428 0.68 0.986285
Target:  5'- uGAAGCGGAAgAcCAGgCGCCGGAgCUg -3'
miRNA:   3'- -CUUUGUUUUgUcGUCgGCGGCCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 193352 0.68 0.986285
Target:  5'- cGAGCAAcACAGCAGCCGgugccaCGGGc-- -3'
miRNA:   3'- cUUUGUUuUGUCGUCGGCg-----GCCUaga -5'
10971 5' -50.8 NC_002794.1 + 112855 0.68 0.985771
Target:  5'- --cGCGccGCAGCAGCUGCUgcagcgcgcccacgGGAUCg -3'
miRNA:   3'- cuuUGUuuUGUCGUCGGCGG--------------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 122940 0.68 0.982576
Target:  5'- aGGAGCGGAACcGguGCgGCUGGAg-- -3'
miRNA:   3'- -CUUUGUUUUGuCguCGgCGGCCUaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.