miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 71058 0.86 0.244448
Target:  5'- gGAAGCcgccgccGCAGCAGCCGCCGGGUCc -3'
miRNA:   3'- -CUUUGuuu----UGUCGUCGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 21368 0.82 0.427872
Target:  5'- aGAGACGcgGCGGCGGCCGCCGucUCUu -3'
miRNA:   3'- -CUUUGUuuUGUCGUCGGCGGCcuAGA- -5'
10971 5' -50.8 NC_002794.1 + 107881 0.8 0.524854
Target:  5'- gGAGGCGGcGCGGCgggugcGGCUGCCGGGUCUg -3'
miRNA:   3'- -CUUUGUUuUGUCG------UCGGCGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 105717 0.79 0.545301
Target:  5'- cGAGGCGAucGCGGCGGCCGUCGGGa-- -3'
miRNA:   3'- -CUUUGUUu-UGUCGUCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 63472 0.79 0.565999
Target:  5'- -cGACGAGGCGGCGGCCGCCG--UCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGGCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 147008 0.79 0.576425
Target:  5'- -cGGCG--GCGGCGGCCGCCGGcgCUc -3'
miRNA:   3'- cuUUGUuuUGUCGUCGGCGGCCuaGA- -5'
10971 5' -50.8 NC_002794.1 + 68819 0.78 0.597397
Target:  5'- cGAGAC-AGACGGCGacGCCGCCGGcgCUc -3'
miRNA:   3'- -CUUUGuUUUGUCGU--CGGCGGCCuaGA- -5'
10971 5' -50.8 NC_002794.1 + 33446 0.77 0.639602
Target:  5'- --uGCAGGACcucgGGCGGCCGCCGGAc-- -3'
miRNA:   3'- cuuUGUUUUG----UCGUCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 184995 0.77 0.650159
Target:  5'- --cGCGAAGCGGCGGCCGCCcacgGGAcUCa -3'
miRNA:   3'- cuuUGUUUUGUCGUCGGCGG----CCU-AGa -5'
10971 5' -50.8 NC_002794.1 + 91229 0.77 0.671218
Target:  5'- cGGACGGcGCGGCGGCCGUCGGG-CUg -3'
miRNA:   3'- cUUUGUUuUGUCGUCGGCGGCCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 48220 0.76 0.702528
Target:  5'- aGAGGCAGAGCAgGCGGCCGCC--AUCg -3'
miRNA:   3'- -CUUUGUUUUGU-CGUCGGCGGccUAGa -5'
10971 5' -50.8 NC_002794.1 + 125751 0.76 0.712851
Target:  5'- --cGCGGGACGGCGGCCGgCGGcUCg -3'
miRNA:   3'- cuuUGUUUUGUCGUCGGCgGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 114028 0.76 0.733269
Target:  5'- cAGGCGGGGCAGCGGCCGCCcguaGUCg -3'
miRNA:   3'- cUUUGUUUUGUCGUCGGCGGcc--UAGa -5'
10971 5' -50.8 NC_002794.1 + 47730 0.75 0.753312
Target:  5'- --cACGAAGCAGC--CCGCCGGGUCc -3'
miRNA:   3'- cuuUGUUUUGUCGucGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 121446 0.75 0.763168
Target:  5'- cGAGACc--ACGGCcGCCGUCGGGUCg -3'
miRNA:   3'- -CUUUGuuuUGUCGuCGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 149855 0.75 0.772901
Target:  5'- gGGGACGAGG-AGCGGCCGCCcgcucgggGGGUCUg -3'
miRNA:   3'- -CUUUGUUUUgUCGUCGGCGG--------CCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 61516 0.75 0.782499
Target:  5'- --cGCcGGACGGCGGCCGCCGGc--- -3'
miRNA:   3'- cuuUGuUUUGUCGUCGGCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 189242 0.74 0.801255
Target:  5'- -uGACGAucaGACAGCGGCCcaGCgGGAUCa -3'
miRNA:   3'- cuUUGUU---UUGUCGUCGG--CGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 95807 0.74 0.810393
Target:  5'- aGGAACcgggGGAGCGGCGGCgGCCGGGg-- -3'
miRNA:   3'- -CUUUG----UUUUGUCGUCGgCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 26259 0.74 0.819359
Target:  5'- aAAGCGAGACcuugggGGCGGCucgauCGCCGGAUCg -3'
miRNA:   3'- cUUUGUUUUG------UCGUCG-----GCGGCCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.