miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 80427 0.74 0.827273
Target:  5'- cGGGCGGGGCcgccgccGGCGGCCGCCGGcccGUCg -3'
miRNA:   3'- cUUUGUUUUG-------UCGUCGGCGGCC---UAGa -5'
10971 5' -50.8 NC_002794.1 + 95834 0.73 0.845134
Target:  5'- gGGAGCG--GCGGCGGCgGCCGGGg-- -3'
miRNA:   3'- -CUUUGUuuUGUCGUCGgCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 96921 0.73 0.853325
Target:  5'- gGAGGCGccggcGACAGCAcGCCGUCGGAgUCUc -3'
miRNA:   3'- -CUUUGUu----UUGUCGU-CGGCGGCCU-AGA- -5'
10971 5' -50.8 NC_002794.1 + 88967 0.72 0.883886
Target:  5'- -----cGAGC-GUGGCCGCCGGAUCg -3'
miRNA:   3'- cuuuguUUUGuCGUCGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 67009 0.72 0.890945
Target:  5'- cAGACGAGuccgGCGGCGGCgGCCGGcUCc -3'
miRNA:   3'- cUUUGUUU----UGUCGUCGgCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 122560 0.72 0.890945
Target:  5'- uGGACGAGaacgcGCAGCGGCUGCUGGGg-- -3'
miRNA:   3'- cUUUGUUU-----UGUCGUCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 128148 0.72 0.890945
Target:  5'- aGAAGCGAcgcGACGGCGGCuCGCgccgcggaCGGGUCg -3'
miRNA:   3'- -CUUUGUU---UUGUCGUCG-GCG--------GCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 142123 0.72 0.897763
Target:  5'- --uGCGAccCGGCGGCCgaccGCCGGGUCa -3'
miRNA:   3'- cuuUGUUuuGUCGUCGG----CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 139720 0.72 0.904334
Target:  5'- cGAGGaucaGGAACGGCAGCaCGCCGacGGUCa -3'
miRNA:   3'- -CUUUg---UUUUGUCGUCG-GCGGC--CUAGa -5'
10971 5' -50.8 NC_002794.1 + 37120 0.72 0.904334
Target:  5'- -cGGCGAAgacccGCAGCu-CCGCCGGGUCg -3'
miRNA:   3'- cuUUGUUU-----UGUCGucGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 184918 0.72 0.904334
Target:  5'- gGGAACAu--CGGCAGCCGgCGG-UCg -3'
miRNA:   3'- -CUUUGUuuuGUCGUCGGCgGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 32546 0.72 0.910656
Target:  5'- cGGAAagguaGGAACGGCAGCCG-CGGAUa- -3'
miRNA:   3'- -CUUUg----UUUUGUCGUCGGCgGCCUAga -5'
10971 5' -50.8 NC_002794.1 + 141648 0.72 0.910656
Target:  5'- -cGGCGugGCcGCGGCCGCCGGcggGUCg -3'
miRNA:   3'- cuUUGUuuUGuCGUCGGCGGCC---UAGa -5'
10971 5' -50.8 NC_002794.1 + 95761 0.71 0.916727
Target:  5'- --cGCGGGGCGGCGGCCgcgacggcgGCCGGggCg -3'
miRNA:   3'- cuuUGUUUUGUCGUCGG---------CGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 9102 0.71 0.916727
Target:  5'- gGGAGCAGcAACAGCAGCagugagGCCGGGc-- -3'
miRNA:   3'- -CUUUGUU-UUGUCGUCGg-----CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 110611 0.71 0.920825
Target:  5'- uGAAGCGGAGCGggagccgcggcgccGCGGCgGCgGGGUCg -3'
miRNA:   3'- -CUUUGUUUUGU--------------CGUCGgCGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 71363 0.71 0.922543
Target:  5'- -cAGCAGGuGCGGCAGCCGCCccaGGAcCUc -3'
miRNA:   3'- cuUUGUUU-UGUCGUCGGCGG---CCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 104477 0.71 0.922543
Target:  5'- --uGCAGGAUgcgGGCGGCCacggcgGCCGGGUCg -3'
miRNA:   3'- cuuUGUUUUG---UCGUCGG------CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 105392 0.71 0.938467
Target:  5'- cGAGCuguuCGGCcGCCGCgCGGAUCUc -3'
miRNA:   3'- cUUUGuuuuGUCGuCGGCG-GCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 37890 0.7 0.942798
Target:  5'- gGggGCGGuggcggcGGCAGCGGCuCGCCGGccUCa -3'
miRNA:   3'- -CuuUGUU-------UUGUCGUCG-GCGGCCu-AGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.