miRNA display CGI


Results 41 - 60 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 193267 0.7 0.943267
Target:  5'- cGAGCAGcagcAACAGCGGCgugCGCCGGuaGUCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUCG---GCGGCC--UAGa -5'
10971 5' -50.8 NC_002794.1 + 62498 0.7 0.943267
Target:  5'- uGGACGgcGGGCGGC-GCCGCCGGcgCc -3'
miRNA:   3'- cUUUGU--UUUGUCGuCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 149224 0.7 0.947373
Target:  5'- gGAAGCGAGGC-GCcGCCGCCgucgccgGGGUCg -3'
miRNA:   3'- -CUUUGUUUUGuCGuCGGCGG-------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 18033 0.7 0.947817
Target:  5'- --uACGuGACGGCcGCCaccccGCCGGAUCUg -3'
miRNA:   3'- cuuUGUuUUGUCGuCGG-----CGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 151147 0.7 0.947817
Target:  5'- -cGGCGAcgAGCAGCAGCUGaacCUGGGUCa -3'
miRNA:   3'- cuUUGUU--UUGUCGUCGGC---GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 111622 0.7 0.952118
Target:  5'- cGggGCcgccGCGGCcGCCGCCGG-UCg -3'
miRNA:   3'- -CuuUGuuu-UGUCGuCGGCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 72741 0.7 0.952118
Target:  5'- --cGCucccGCGGCGGCCGCCgaccgagcGGAUCUu -3'
miRNA:   3'- cuuUGuuu-UGUCGUCGGCGG--------CCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 63700 0.7 0.952118
Target:  5'- -uGACGAcGACGGCGccggcGCCGCCGGAc-- -3'
miRNA:   3'- cuUUGUU-UUGUCGU-----CGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 184587 0.7 0.956175
Target:  5'- -cGGCGGccACGcGCGGCCGCgGGAUCg -3'
miRNA:   3'- cuUUGUUu-UGU-CGUCGGCGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 52763 0.7 0.956175
Target:  5'- --cGCGccGCGGCccgGGCCGCgGGAUCg -3'
miRNA:   3'- cuuUGUuuUGUCG---UCGGCGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 114518 0.7 0.956175
Target:  5'- cGGAGCGagucGAGCGGCAGCCGCgCGag-CUg -3'
miRNA:   3'- -CUUUGU----UUUGUCGUCGGCG-GCcuaGA- -5'
10971 5' -50.8 NC_002794.1 + 154169 0.7 0.956175
Target:  5'- cGggGCAGAACuacGUgaucagGGCCGCCGacGAUCUg -3'
miRNA:   3'- -CuuUGUUUUGu--CG------UCGGCGGC--CUAGA- -5'
10971 5' -50.8 NC_002794.1 + 102696 0.7 0.959991
Target:  5'- --uACGugcuGACGGCcgGGCCGCCGGAc-- -3'
miRNA:   3'- cuuUGUu---UUGUCG--UCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 61547 0.69 0.963572
Target:  5'- aAGACGAcgccgccgcGGCGGCGGCCGCCG--UCg -3'
miRNA:   3'- cUUUGUU---------UUGUCGUCGGCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 44256 0.69 0.963572
Target:  5'- --uGCcGGGCGGCucGGCCGCCGGGg-- -3'
miRNA:   3'- cuuUGuUUUGUCG--UCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 125345 0.69 0.966923
Target:  5'- -cGGCGcacCGGCAGCCGCUGGccGUCa -3'
miRNA:   3'- cuUUGUuuuGUCGUCGGCGGCC--UAGa -5'
10971 5' -50.8 NC_002794.1 + 131182 0.69 0.966923
Target:  5'- cGAGCcgGAGACAGCAcGgCGCCGGggCg -3'
miRNA:   3'- cUUUG--UUUUGUCGU-CgGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 133919 0.69 0.969747
Target:  5'- --uACGAGACGGCGGCCGCgcccguccaguugCGGGg-- -3'
miRNA:   3'- cuuUGUUUUGUCGUCGGCG-------------GCCUaga -5'
10971 5' -50.8 NC_002794.1 + 145583 0.69 0.97005
Target:  5'- -cGACGGAGCGGCGGCCGgcucccgCGGAgUCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGGCg------GCCU-AGa -5'
10971 5' -50.8 NC_002794.1 + 107056 0.69 0.97005
Target:  5'- gGAGGCGGcgggcGCGGC-GCCGCCGGcauGUCg -3'
miRNA:   3'- -CUUUGUUu----UGUCGuCGGCGGCC---UAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.