miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 145996 0.66 0.99547
Target:  5'- ---cCAGAACGGCcGCCgggGCCGGAg-- -3'
miRNA:   3'- cuuuGUUUUGUCGuCGG---CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 192001 0.66 0.99547
Target:  5'- cGGGACGGuAGCGGCGGUgGCCGcGG-CUg -3'
miRNA:   3'- -CUUUGUU-UUGUCGUCGgCGGC-CUaGA- -5'
10971 5' -50.8 NC_002794.1 + 37730 0.66 0.99547
Target:  5'- --cGCGAGcgGCGGC-GCCGCCGGcggCg -3'
miRNA:   3'- cuuUGUUU--UGUCGuCGGCGGCCua-Ga -5'
10971 5' -50.8 NC_002794.1 + 49014 0.66 0.99547
Target:  5'- --cGCGccGCGGCGGCCGCgGcGUCg -3'
miRNA:   3'- cuuUGUuuUGUCGUCGGCGgCcUAGa -5'
10971 5' -50.8 NC_002794.1 + 190667 0.66 0.99547
Target:  5'- --cGCGcccGCcGC-GCCGCCGGGUCUc -3'
miRNA:   3'- cuuUGUuu-UGuCGuCGGCGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 6922 0.66 0.995255
Target:  5'- -uGACcaGAAGCcGCAGCCGCCGcgcggcacccucucGGUCUc -3'
miRNA:   3'- cuUUG--UUUUGuCGUCGGCGGC--------------CUAGA- -5'
10971 5' -50.8 NC_002794.1 + 187337 0.66 0.994722
Target:  5'- ---cCGGAGCAGCAGCcCGUCGuucgcGGUCa -3'
miRNA:   3'- cuuuGUUUUGUCGUCG-GCGGC-----CUAGa -5'
10971 5' -50.8 NC_002794.1 + 45579 0.66 0.994722
Target:  5'- aGAAGauGGGCGGCAGCaggGCCGGGa-- -3'
miRNA:   3'- -CUUUguUUUGUCGUCGg--CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 67723 0.66 0.994722
Target:  5'- aGggGCucggucccGGCGGCGGCCacccgagcCCGGAUCa -3'
miRNA:   3'- -CuuUGuu------UUGUCGUCGGc-------GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 185737 0.66 0.994722
Target:  5'- cAAACAGAcacacACAcGCguccAGCCGCCGGcgCg -3'
miRNA:   3'- cUUUGUUU-----UGU-CG----UCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 91999 0.66 0.994722
Target:  5'- cGggGCAGAACGGCGGCaGCgCGc-UCUa -3'
miRNA:   3'- -CuuUGUUUUGUCGUCGgCG-GCcuAGA- -5'
10971 5' -50.8 NC_002794.1 + 194703 0.66 0.993878
Target:  5'- --cACGAAccacgcGCAGCacAGCCGCCGcGUCa -3'
miRNA:   3'- cuuUGUUU------UGUCG--UCGGCGGCcUAGa -5'
10971 5' -50.8 NC_002794.1 + 194135 0.66 0.993878
Target:  5'- uGAGGCAGcggccGCAGCAGCgcccgcgagcccUGCCGGcgCg -3'
miRNA:   3'- -CUUUGUUu----UGUCGUCG------------GCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 55183 0.66 0.993878
Target:  5'- cGAcuCGAGGCGGCGGCCcuaacaCCGGcgCg -3'
miRNA:   3'- -CUuuGUUUUGUCGUCGGc-----GGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 188770 0.67 0.992928
Target:  5'- uGGAACAGcccggugcAGCGGUAGCgGCCGGc--- -3'
miRNA:   3'- -CUUUGUU--------UUGUCGUCGgCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 42199 0.67 0.992928
Target:  5'- ---cCGAAACucGCcGCCGCCGG-UCUg -3'
miRNA:   3'- cuuuGUUUUGu-CGuCGGCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 19460 0.67 0.992928
Target:  5'- cGAGCGGcggcGGCGGCGGgacCCGCCGG-UCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUC---GGCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 179537 0.67 0.992928
Target:  5'- -cGACGAcGGCGGUAGCC-CCGcGGUCa -3'
miRNA:   3'- cuUUGUU-UUGUCGUCGGcGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 44721 0.67 0.992928
Target:  5'- -cGGCGAcguCGGCcggcGCCGCCGGAgggCUa -3'
miRNA:   3'- cuUUGUUuu-GUCGu---CGGCGGCCUa--GA- -5'
10971 5' -50.8 NC_002794.1 + 41843 0.67 0.992928
Target:  5'- cGGGuCGAucAGCAGCcccaGGCCGCCGGGc-- -3'
miRNA:   3'- -CUUuGUU--UUGUCG----UCGGCGGCCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.