Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10971 | 5' | -50.8 | NC_002794.1 | + | 42199 | 0.67 | 0.992928 |
Target: 5'- ---cCGAAACucGCcGCCGCCGG-UCUg -3' miRNA: 3'- cuuuGUUUUGu-CGuCGGCGGCCuAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 19460 | 0.67 | 0.992928 |
Target: 5'- cGAGCGGcggcGGCGGCGGgacCCGCCGG-UCg -3' miRNA: 3'- cUUUGUU----UUGUCGUC---GGCGGCCuAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 179537 | 0.67 | 0.992928 |
Target: 5'- -cGACGAcGGCGGUAGCC-CCGcGGUCa -3' miRNA: 3'- cuUUGUU-UUGUCGUCGGcGGC-CUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 44721 | 0.67 | 0.992928 |
Target: 5'- -cGGCGAcguCGGCcggcGCCGCCGGAgggCUa -3' miRNA: 3'- cuUUGUUuu-GUCGu---CGGCGGCCUa--GA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 62086 | 0.67 | 0.992928 |
Target: 5'- -cGACGAcggcGAC-GCGGCgCGCCGGAcggUCUg -3' miRNA: 3'- cuUUGUU----UUGuCGUCG-GCGGCCU---AGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 115803 | 0.67 | 0.991863 |
Target: 5'- uGGAGCGu--CGGCAGaagcucuuCCGCCuGGAUCg -3' miRNA: 3'- -CUUUGUuuuGUCGUC--------GGCGG-CCUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 71604 | 0.67 | 0.990676 |
Target: 5'- uGGGCGA-ACAGCAGCCGCUuGAc-- -3' miRNA: 3'- cUUUGUUuUGUCGUCGGCGGcCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 65179 | 0.67 | 0.990676 |
Target: 5'- cGAGACc-GGCGGguGCCGgCGaGGUCg -3' miRNA: 3'- -CUUUGuuUUGUCguCGGCgGC-CUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 137447 | 0.67 | 0.990676 |
Target: 5'- uGGAACGAcuCGGCGGaauCCGCCGuGUCg -3' miRNA: 3'- -CUUUGUUuuGUCGUC---GGCGGCcUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 99100 | 0.67 | 0.99055 |
Target: 5'- -cAGCGGAgugccguGCGGCAGCCcCUGGAUUUc -3' miRNA: 3'- cuUUGUUU-------UGUCGUCGGcGGCCUAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 64805 | 0.67 | 0.989217 |
Target: 5'- cGAGCGAcgccgcgGACGGCGGCgaGCCGGcgCc -3' miRNA: 3'- cUUUGUU-------UUGUCGUCGg-CGGCCuaGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 30087 | 0.67 | 0.988498 |
Target: 5'- -cGACGAGGCGcGCGGCCGgucccgacccaccgcCCGGGUUUu -3' miRNA: 3'- cuUUGUUUUGU-CGUCGGC---------------GGCCUAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 144889 | 0.67 | 0.987896 |
Target: 5'- cGggGCGAGACGcucGC-GCCGCUGGGc-- -3' miRNA: 3'- -CuuUGUUUUGU---CGuCGGCGGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 118268 | 0.67 | 0.987896 |
Target: 5'- ---cCGGGGCGGCGG-CGCCGGcGUCg -3' miRNA: 3'- cuuuGUUUUGUCGUCgGCGGCC-UAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 36428 | 0.68 | 0.986285 |
Target: 5'- uGAAGCGGAAgAcCAGgCGCCGGAgCUg -3' miRNA: 3'- -CUUUGUUUUgUcGUCgGCGGCCUaGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 193352 | 0.68 | 0.986285 |
Target: 5'- cGAGCAAcACAGCAGCCGgugccaCGGGc-- -3' miRNA: 3'- cUUUGUUuUGUCGUCGGCg-----GCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 112855 | 0.68 | 0.985771 |
Target: 5'- --cGCGccGCAGCAGCUGCUgcagcgcgcccacgGGAUCg -3' miRNA: 3'- cuuUGUuuUGUCGUCGGCGG--------------CCUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 42657 | 0.68 | 0.984515 |
Target: 5'- cGAAGCc-GACGGC-GCCGCCGGc--- -3' miRNA: 3'- -CUUUGuuUUGUCGuCGGCGGCCuaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 145735 | 0.68 | 0.982576 |
Target: 5'- ----gGAGGCGGCGG-CGCCGGcAUCg -3' miRNA: 3'- cuuugUUUUGUCGUCgGCGGCC-UAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 122940 | 0.68 | 0.982576 |
Target: 5'- aGGAGCGGAACcGguGCgGCUGGAg-- -3' miRNA: 3'- -CUUUGUUUUGuCguCGgCGGCCUaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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