miRNA display CGI


Results 61 - 80 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 193083 0.68 0.982576
Target:  5'- cGGGACAGccGCAGCAGC-GUCGuGAUCa -3'
miRNA:   3'- -CUUUGUUu-UGUCGUCGgCGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 122940 0.68 0.982576
Target:  5'- aGGAGCGGAACcGguGCgGCUGGAg-- -3'
miRNA:   3'- -CUUUGUUUUGuCguCGgCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 145735 0.68 0.982576
Target:  5'- ----gGAGGCGGCGG-CGCCGGcAUCg -3'
miRNA:   3'- cuuugUUUUGUCGUCgGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 147038 0.68 0.982576
Target:  5'- aGGACGAAGCcGuCGGCgGCCGG-UCUa -3'
miRNA:   3'- cUUUGUUUUGuC-GUCGgCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 111414 0.68 0.980459
Target:  5'- cGAGACcguAGGCGcGgAGCCGCCaGAUCg -3'
miRNA:   3'- -CUUUGu--UUUGU-CgUCGGCGGcCUAGa -5'
10971 5' -50.8 NC_002794.1 + 43617 0.68 0.980459
Target:  5'- -cAGCAGGAC-GUGGCCGCCaGGAgCUg -3'
miRNA:   3'- cuUUGUUUUGuCGUCGGCGG-CCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 17312 0.68 0.978157
Target:  5'- -cGACGGugacGACGGUcaGGCCGCCGGcGUCc -3'
miRNA:   3'- cuUUGUU----UUGUCG--UCGGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 18699 0.68 0.978157
Target:  5'- -cGGCAcgGCGGCGGCgGuCCGGAcgUCg -3'
miRNA:   3'- cuUUGUuuUGUCGUCGgC-GGCCU--AGa -5'
10971 5' -50.8 NC_002794.1 + 114709 0.68 0.978157
Target:  5'- cGAGACGGAcggcggcgGCGGCGGCU-CCGGGUUc -3'
miRNA:   3'- -CUUUGUUU--------UGUCGUCGGcGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 110266 0.68 0.978157
Target:  5'- -cGGCGucgcGACGGCGGCCGCCGuccUCg -3'
miRNA:   3'- cuUUGUu---UUGUCGUCGGCGGCcu-AGa -5'
10971 5' -50.8 NC_002794.1 + 136434 0.68 0.978157
Target:  5'- ---cCGGAGCGGCGGCUGCguccgcuguUGGGUCa -3'
miRNA:   3'- cuuuGUUUUGUCGUCGGCG---------GCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 176382 0.68 0.978157
Target:  5'- -cAGCGAAcccgcgGCGGCAGCCaCCuGGGUCa -3'
miRNA:   3'- cuUUGUUU------UGUCGUCGGcGG-CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 106780 0.69 0.97566
Target:  5'- aGGACAuGAGCAGaucaAGCCGUCGGcgCa -3'
miRNA:   3'- cUUUGU-UUUGUCg---UCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 133204 0.69 0.97566
Target:  5'- -uGACGuAGCGGUccGCCGCCGGAcauaUCUg -3'
miRNA:   3'- cuUUGUuUUGUCGu-CGGCGGCCU----AGA- -5'
10971 5' -50.8 NC_002794.1 + 145460 0.69 0.97566
Target:  5'- cGGACAGAugGaGCGGUCGCCgaaggccgaGGAUCg -3'
miRNA:   3'- cUUUGUUUugU-CGUCGGCGG---------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 150807 0.69 0.97566
Target:  5'- --cGCGgcGGACGGCcgAGCCGCUGGAgCUg -3'
miRNA:   3'- cuuUGU--UUUGUCG--UCGGCGGCCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 139671 0.69 0.97566
Target:  5'- gGAcGCGAAuuuGCAGCCGCCGGc--- -3'
miRNA:   3'- -CUuUGUUUuguCGUCGGCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 48154 0.69 0.97566
Target:  5'- -cGACGAGGCAGCGGC-GCCGcuUCa -3'
miRNA:   3'- cuUUGUUUUGUCGUCGgCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 148114 0.69 0.974065
Target:  5'- aGAAGCG--ACGGUcggugucgggcgcggGGCCGCCGGggCg -3'
miRNA:   3'- -CUUUGUuuUGUCG---------------UCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 21923 0.69 0.97296
Target:  5'- gGAGACG--ACGGCGGCgGCgCGGcgCUc -3'
miRNA:   3'- -CUUUGUuuUGUCGUCGgCG-GCCuaGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.