miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 2603 0.67 0.992928
Target:  5'- cAAGCAugGCAccuaccCGGCCGCCGGcgCg -3'
miRNA:   3'- cUUUGUuuUGUc-----GUCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 6922 0.66 0.995255
Target:  5'- -uGACcaGAAGCcGCAGCCGCCGcgcggcacccucucGGUCUc -3'
miRNA:   3'- cuUUG--UUUUGuCGUCGGCGGC--------------CUAGA- -5'
10971 5' -50.8 NC_002794.1 + 9102 0.71 0.916727
Target:  5'- gGGAGCAGcAACAGCAGCagugagGCCGGGc-- -3'
miRNA:   3'- -CUUUGUU-UUGUCGUCGg-----CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 16300 0.66 0.996707
Target:  5'- -uAGCcuGGCGGCcgcGGCCGgCUGGAUCc -3'
miRNA:   3'- cuUUGuuUUGUCG---UCGGC-GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 17312 0.68 0.978157
Target:  5'- -cGACGGugacGACGGUcaGGCCGCCGGcGUCc -3'
miRNA:   3'- cuUUGUU----UUGUCG--UCGGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 18033 0.7 0.947817
Target:  5'- --uACGuGACGGCcGCCaccccGCCGGAUCUg -3'
miRNA:   3'- cuuUGUuUUGUCGuCGG-----CGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 18699 0.68 0.978157
Target:  5'- -cGGCAcgGCGGCGGCgGuCCGGAcgUCg -3'
miRNA:   3'- cuUUGUuuUGUCGUCGgC-GGCCU--AGa -5'
10971 5' -50.8 NC_002794.1 + 19460 0.67 0.992928
Target:  5'- cGAGCGGcggcGGCGGCGGgacCCGCCGG-UCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUC---GGCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 21368 0.82 0.427872
Target:  5'- aGAGACGcgGCGGCGGCCGCCGucUCUu -3'
miRNA:   3'- -CUUUGUuuUGUCGUCGGCGGCcuAGA- -5'
10971 5' -50.8 NC_002794.1 + 21923 0.69 0.97296
Target:  5'- gGAGACG--ACGGCGGCgGCgCGGcgCUc -3'
miRNA:   3'- -CUUUGUuuUGUCGUCGgCG-GCCuaGA- -5'
10971 5' -50.8 NC_002794.1 + 26259 0.74 0.819359
Target:  5'- aAAGCGAGACcuugggGGCGGCucgauCGCCGGAUCg -3'
miRNA:   3'- cUUUGUUUUG------UCGUCG-----GCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 30087 0.67 0.988498
Target:  5'- -cGACGAGGCGcGCGGCCGgucccgacccaccgcCCGGGUUUu -3'
miRNA:   3'- cuUUGUUUUGU-CGUCGGC---------------GGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 30232 0.66 0.996707
Target:  5'- -------uACGGCAGCCGCauCGGGUUc -3'
miRNA:   3'- cuuuguuuUGUCGUCGGCG--GCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 32546 0.72 0.910656
Target:  5'- cGGAAagguaGGAACGGCAGCCG-CGGAUa- -3'
miRNA:   3'- -CUUUg----UUUUGUCGUCGGCgGCCUAga -5'
10971 5' -50.8 NC_002794.1 + 33446 0.77 0.639602
Target:  5'- --uGCAGGACcucgGGCGGCCGCCGGAc-- -3'
miRNA:   3'- cuuUGUUUUG----UCGUCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 33779 0.66 0.996129
Target:  5'- uGAAGCAcGACAGCcuguGCCGCCa----- -3'
miRNA:   3'- -CUUUGUuUUGUCGu---CGGCGGccuaga -5'
10971 5' -50.8 NC_002794.1 + 35765 0.68 0.982576
Target:  5'- -cGACGucGCGGCAccGUCGCCGGcGUCg -3'
miRNA:   3'- cuUUGUuuUGUCGU--CGGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 36428 0.68 0.986285
Target:  5'- uGAAGCGGAAgAcCAGgCGCCGGAgCUg -3'
miRNA:   3'- -CUUUGUUUUgUcGUCgGCGGCCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 37120 0.72 0.904334
Target:  5'- -cGGCGAAgacccGCAGCu-CCGCCGGGUCg -3'
miRNA:   3'- cuUUGUUU-----UGUCGucGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 37730 0.66 0.99547
Target:  5'- --cGCGAGcgGCGGC-GCCGCCGGcggCg -3'
miRNA:   3'- cuuUGUUU--UGUCGuCGGCGGCCua-Ga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.