miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 37890 0.7 0.942798
Target:  5'- gGggGCGGuggcggcGGCAGCGGCuCGCCGGccUCa -3'
miRNA:   3'- -CuuUGUU-------UUGUCGUCG-GCGGCCu-AGa -5'
10971 5' -50.8 NC_002794.1 + 38493 0.66 0.996067
Target:  5'- gGAAGCGcgGCGGCGccggucGCCGCCGccuccgcGAUCc -3'
miRNA:   3'- -CUUUGUuuUGUCGU------CGGCGGC-------CUAGa -5'
10971 5' -50.8 NC_002794.1 + 41682 0.66 0.996707
Target:  5'- --cGCAGGAgcGCccGGaCCGCCGGAUCg -3'
miRNA:   3'- cuuUGUUUUguCG--UC-GGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 41843 0.67 0.992928
Target:  5'- cGGGuCGAucAGCAGCcccaGGCCGCCGGGc-- -3'
miRNA:   3'- -CUUuGUU--UUGUCG----UCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 42199 0.67 0.992928
Target:  5'- ---cCGAAACucGCcGCCGCCGG-UCUg -3'
miRNA:   3'- cuuuGUUUUGu-CGuCGGCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 42590 0.66 0.99547
Target:  5'- cGGAGgAGGGC-GCGGCgGCCGGGa-- -3'
miRNA:   3'- -CUUUgUUUUGuCGUCGgCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 42657 0.68 0.984515
Target:  5'- cGAAGCc-GACGGC-GCCGCCGGc--- -3'
miRNA:   3'- -CUUUGuuUUGUCGuCGGCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 43231 0.68 0.982576
Target:  5'- cGAuGCGcuGCAGCGGCaccgGCCGGAa-- -3'
miRNA:   3'- -CUuUGUuuUGUCGUCGg---CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 43617 0.68 0.980459
Target:  5'- -cAGCAGGAC-GUGGCCGCCaGGAgCUg -3'
miRNA:   3'- cuUUGUUUUGuCGUCGGCGG-CCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 44256 0.69 0.963572
Target:  5'- --uGCcGGGCGGCucGGCCGCCGGGg-- -3'
miRNA:   3'- cuuUGuUUUGUCG--UCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 44487 0.66 0.996707
Target:  5'- cGAAACAGAgacguugucucACGGCGGCCcagaCCGGGc-- -3'
miRNA:   3'- -CUUUGUUU-----------UGUCGUCGGc---GGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 44721 0.67 0.992928
Target:  5'- -cGGCGAcguCGGCcggcGCCGCCGGAgggCUa -3'
miRNA:   3'- cuUUGUUuu-GUCGu---CGGCGGCCUa--GA- -5'
10971 5' -50.8 NC_002794.1 + 45579 0.66 0.994722
Target:  5'- aGAAGauGGGCGGCAGCaggGCCGGGa-- -3'
miRNA:   3'- -CUUUguUUUGUCGUCGg--CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 47730 0.75 0.753312
Target:  5'- --cACGAAGCAGC--CCGCCGGGUCc -3'
miRNA:   3'- cuuUGUUUUGUCGucGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 48154 0.69 0.97566
Target:  5'- -cGACGAGGCAGCGGC-GCCGcuUCa -3'
miRNA:   3'- cuUUGUUUUGUCGUCGgCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 48220 0.76 0.702528
Target:  5'- aGAGGCAGAGCAgGCGGCCGCC--AUCg -3'
miRNA:   3'- -CUUUGUUUUGU-CGUCGGCGGccUAGa -5'
10971 5' -50.8 NC_002794.1 + 49014 0.66 0.99547
Target:  5'- --cGCGccGCGGCGGCCGCgGcGUCg -3'
miRNA:   3'- cuuUGUuuUGUCGUCGGCGgCcUAGa -5'
10971 5' -50.8 NC_002794.1 + 52763 0.7 0.956175
Target:  5'- --cGCGccGCGGCccgGGCCGCgGGAUCg -3'
miRNA:   3'- cuuUGUuuUGUCG---UCGGCGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 55183 0.66 0.993878
Target:  5'- cGAcuCGAGGCGGCGGCCcuaacaCCGGcgCg -3'
miRNA:   3'- -CUuuGUUUUGUCGUCGGc-----GGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 58407 0.66 0.99547
Target:  5'- uGGAGCAcgccAAGguGCGGCCGCCGc---- -3'
miRNA:   3'- -CUUUGU----UUUguCGUCGGCGGCcuaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.