miRNA display CGI


Results 41 - 60 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 61516 0.75 0.782499
Target:  5'- --cGCcGGACGGCGGCCGCCGGc--- -3'
miRNA:   3'- cuuUGuUUUGUCGUCGGCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 61547 0.69 0.963572
Target:  5'- aAGACGAcgccgccgcGGCGGCGGCCGCCG--UCg -3'
miRNA:   3'- cUUUGUU---------UUGUCGUCGGCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 61821 0.66 0.99547
Target:  5'- --------cCGGCGGCCGCCGGcggccggcGUCa -3'
miRNA:   3'- cuuuguuuuGUCGUCGGCGGCC--------UAGa -5'
10971 5' -50.8 NC_002794.1 + 62086 0.67 0.992928
Target:  5'- -cGACGAcggcGAC-GCGGCgCGCCGGAcggUCUg -3'
miRNA:   3'- cuUUGUU----UUGuCGUCG-GCGGCCU---AGA- -5'
10971 5' -50.8 NC_002794.1 + 62498 0.7 0.943267
Target:  5'- uGGACGgcGGGCGGC-GCCGCCGGcgCc -3'
miRNA:   3'- cUUUGU--UUUGUCGuCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 63472 0.79 0.565999
Target:  5'- -cGACGAGGCGGCGGCCGCCG--UCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGGCGGCcuAGa -5'
10971 5' -50.8 NC_002794.1 + 63700 0.7 0.952118
Target:  5'- -uGACGAcGACGGCGccggcGCCGCCGGAc-- -3'
miRNA:   3'- cuUUGUU-UUGUCGU-----CGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 64805 0.67 0.989217
Target:  5'- cGAGCGAcgccgcgGACGGCGGCgaGCCGGcgCc -3'
miRNA:   3'- cUUUGUU-------UUGUCGUCGg-CGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 65179 0.67 0.990676
Target:  5'- cGAGACc-GGCGGguGCCGgCGaGGUCg -3'
miRNA:   3'- -CUUUGuuUUGUCguCGGCgGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 67009 0.72 0.890945
Target:  5'- cAGACGAGuccgGCGGCGGCgGCCGGcUCc -3'
miRNA:   3'- cUUUGUUU----UGUCGUCGgCGGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 67723 0.66 0.994722
Target:  5'- aGggGCucggucccGGCGGCGGCCacccgagcCCGGAUCa -3'
miRNA:   3'- -CuuUGuu------UUGUCGUCGGc-------GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 68819 0.78 0.597397
Target:  5'- cGAGAC-AGACGGCGacGCCGCCGGcgCUc -3'
miRNA:   3'- -CUUUGuUUUGUCGU--CGGCGGCCuaGA- -5'
10971 5' -50.8 NC_002794.1 + 70534 0.66 0.99637
Target:  5'- -uAAUGAAACAGCAGCCgaucgugcgccucgaGCCGcuccaGAUCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGG---------------CGGC-----CUAGa -5'
10971 5' -50.8 NC_002794.1 + 71058 0.86 0.244448
Target:  5'- gGAAGCcgccgccGCAGCAGCCGCCGGGUCc -3'
miRNA:   3'- -CUUUGuuu----UGUCGUCGGCGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 71363 0.71 0.922543
Target:  5'- -cAGCAGGuGCGGCAGCCGCCccaGGAcCUc -3'
miRNA:   3'- cuUUGUUU-UGUCGUCGGCGG---CCUaGA- -5'
10971 5' -50.8 NC_002794.1 + 71604 0.67 0.990676
Target:  5'- uGGGCGA-ACAGCAGCCGCUuGAc-- -3'
miRNA:   3'- cUUUGUUuUGUCGUCGGCGGcCUaga -5'
10971 5' -50.8 NC_002794.1 + 72741 0.7 0.952118
Target:  5'- --cGCucccGCGGCGGCCGCCgaccgagcGGAUCUu -3'
miRNA:   3'- cuuUGuuu-UGUCGUCGGCGG--------CCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 80427 0.74 0.827273
Target:  5'- cGGGCGGGGCcgccgccGGCGGCCGCCGGcccGUCg -3'
miRNA:   3'- cUUUGUUUUG-------UCGUCGGCGGCC---UAGa -5'
10971 5' -50.8 NC_002794.1 + 88125 0.66 0.996129
Target:  5'- -cAGCAc-ACGGCAGCuugCGCCGGAa-- -3'
miRNA:   3'- cuUUGUuuUGUCGUCG---GCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 88967 0.72 0.883886
Target:  5'- -----cGAGC-GUGGCCGCCGGAUCg -3'
miRNA:   3'- cuuuguUUUGuCGUCGGCGGCCUAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.