miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 194703 0.66 0.993878
Target:  5'- --cACGAAccacgcGCAGCacAGCCGCCGcGUCa -3'
miRNA:   3'- cuuUGUUU------UGUCG--UCGGCGGCcUAGa -5'
10971 5' -50.8 NC_002794.1 + 194135 0.66 0.993878
Target:  5'- uGAGGCAGcggccGCAGCAGCgcccgcgagcccUGCCGGcgCg -3'
miRNA:   3'- -CUUUGUUu----UGUCGUCG------------GCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 193352 0.68 0.986285
Target:  5'- cGAGCAAcACAGCAGCCGgugccaCGGGc-- -3'
miRNA:   3'- cUUUGUUuUGUCGUCGGCg-----GCCUaga -5'
10971 5' -50.8 NC_002794.1 + 193267 0.7 0.943267
Target:  5'- cGAGCAGcagcAACAGCGGCgugCGCCGGuaGUCg -3'
miRNA:   3'- cUUUGUU----UUGUCGUCG---GCGGCC--UAGa -5'
10971 5' -50.8 NC_002794.1 + 193083 0.68 0.982576
Target:  5'- cGGGACAGccGCAGCAGC-GUCGuGAUCa -3'
miRNA:   3'- -CUUUGUUu-UGUCGUCGgCGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 192001 0.66 0.99547
Target:  5'- cGGGACGGuAGCGGCGGUgGCCGcGG-CUg -3'
miRNA:   3'- -CUUUGUU-UUGUCGUCGgCGGC-CUaGA- -5'
10971 5' -50.8 NC_002794.1 + 190667 0.66 0.99547
Target:  5'- --cGCGcccGCcGC-GCCGCCGGGUCUc -3'
miRNA:   3'- cuuUGUuu-UGuCGuCGGCGGCCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 189242 0.74 0.801255
Target:  5'- -uGACGAucaGACAGCGGCCcaGCgGGAUCa -3'
miRNA:   3'- cuUUGUU---UUGUCGUCGG--CGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 188770 0.67 0.992928
Target:  5'- uGGAACAGcccggugcAGCGGUAGCgGCCGGc--- -3'
miRNA:   3'- -CUUUGUU--------UUGUCGUCGgCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 188133 0.66 0.996707
Target:  5'- gGAGAUccAACAGCucuuccuccaGGUCgGCCGGGUCg -3'
miRNA:   3'- -CUUUGuuUUGUCG----------UCGG-CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 187337 0.66 0.994722
Target:  5'- ---cCGGAGCAGCAGCcCGUCGuucgcGGUCa -3'
miRNA:   3'- cuuuGUUUUGUCGUCG-GCGGC-----CUAGa -5'
10971 5' -50.8 NC_002794.1 + 185737 0.66 0.994722
Target:  5'- cAAACAGAcacacACAcGCguccAGCCGCCGGcgCg -3'
miRNA:   3'- cUUUGUUU-----UGU-CG----UCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 184995 0.77 0.650159
Target:  5'- --cGCGAAGCGGCGGCCGCCcacgGGAcUCa -3'
miRNA:   3'- cuuUGUUUUGUCGUCGGCGG----CCU-AGa -5'
10971 5' -50.8 NC_002794.1 + 184918 0.72 0.904334
Target:  5'- gGGAACAu--CGGCAGCCGgCGG-UCg -3'
miRNA:   3'- -CUUUGUuuuGUCGUCGGCgGCCuAGa -5'
10971 5' -50.8 NC_002794.1 + 184587 0.7 0.956175
Target:  5'- -cGGCGGccACGcGCGGCCGCgGGAUCg -3'
miRNA:   3'- cuUUGUUu-UGU-CGUCGGCGgCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 179537 0.67 0.992928
Target:  5'- -cGACGAcGGCGGUAGCC-CCGcGGUCa -3'
miRNA:   3'- cuUUGUU-UUGUCGUCGGcGGC-CUAGa -5'
10971 5' -50.8 NC_002794.1 + 176382 0.68 0.978157
Target:  5'- -cAGCGAAcccgcgGCGGCAGCCaCCuGGGUCa -3'
miRNA:   3'- cuUUGUUU------UGUCGUCGGcGG-CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 154169 0.7 0.956175
Target:  5'- cGggGCAGAACuacGUgaucagGGCCGCCGacGAUCUg -3'
miRNA:   3'- -CuuUGUUUUGu--CG------UCGGCGGC--CUAGA- -5'
10971 5' -50.8 NC_002794.1 + 151147 0.7 0.947817
Target:  5'- -cGGCGAcgAGCAGCAGCUGaacCUGGGUCa -3'
miRNA:   3'- cuUUGUU--UUGUCGUCGGC---GGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 150807 0.69 0.97566
Target:  5'- --cGCGgcGGACGGCcgAGCCGCUGGAgCUg -3'
miRNA:   3'- cuuUGU--UUUGUCG--UCGGCGGCCUaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.