miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10971 5' -50.8 NC_002794.1 + 150247 0.69 0.97296
Target:  5'- gGAAGCGcuGCGGCucguGCCGCUcGGUCg -3'
miRNA:   3'- -CUUUGUuuUGUCGu---CGGCGGcCUAGa -5'
10971 5' -50.8 NC_002794.1 + 149855 0.75 0.772901
Target:  5'- gGGGACGAGG-AGCGGCCGCCcgcucgggGGGUCUg -3'
miRNA:   3'- -CUUUGUUUUgUCGUCGGCGG--------CCUAGA- -5'
10971 5' -50.8 NC_002794.1 + 149224 0.7 0.947373
Target:  5'- gGAAGCGAGGC-GCcGCCGCCgucgccgGGGUCg -3'
miRNA:   3'- -CUUUGUUUUGuCGuCGGCGG-------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 148114 0.69 0.974065
Target:  5'- aGAAGCG--ACGGUcggugucgggcgcggGGCCGCCGGggCg -3'
miRNA:   3'- -CUUUGUuuUGUCG---------------UCGGCGGCCuaGa -5'
10971 5' -50.8 NC_002794.1 + 147065 0.66 0.996129
Target:  5'- aGGACGGAGCcGCGGgCGCCcGGUCc -3'
miRNA:   3'- cUUUGUUUUGuCGUCgGCGGcCUAGa -5'
10971 5' -50.8 NC_002794.1 + 147038 0.68 0.982576
Target:  5'- aGGACGAAGCcGuCGGCgGCCGG-UCUa -3'
miRNA:   3'- cUUUGUUUUGuC-GUCGgCGGCCuAGA- -5'
10971 5' -50.8 NC_002794.1 + 147008 0.79 0.576425
Target:  5'- -cGGCG--GCGGCGGCCGCCGGcgCUc -3'
miRNA:   3'- cuUUGUuuUGUCGUCGGCGGCCuaGA- -5'
10971 5' -50.8 NC_002794.1 + 146351 0.69 0.97296
Target:  5'- ---uCGAucGCGGCGGCCGCcCGGGUa- -3'
miRNA:   3'- cuuuGUUu-UGUCGUCGGCG-GCCUAga -5'
10971 5' -50.8 NC_002794.1 + 145996 0.66 0.99547
Target:  5'- ---cCAGAACGGCcGCCgggGCCGGAg-- -3'
miRNA:   3'- cuuuGUUUUGUCGuCGG---CGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 145735 0.68 0.982576
Target:  5'- ----gGAGGCGGCGG-CGCCGGcAUCg -3'
miRNA:   3'- cuuugUUUUGUCGUCgGCGGCC-UAGa -5'
10971 5' -50.8 NC_002794.1 + 145583 0.69 0.97005
Target:  5'- -cGACGGAGCGGCGGCCGgcucccgCGGAgUCg -3'
miRNA:   3'- cuUUGUUUUGUCGUCGGCg------GCCU-AGa -5'
10971 5' -50.8 NC_002794.1 + 145460 0.69 0.97566
Target:  5'- cGGACAGAugGaGCGGUCGCCgaaggccgaGGAUCg -3'
miRNA:   3'- cUUUGUUUugU-CGUCGGCGG---------CCUAGa -5'
10971 5' -50.8 NC_002794.1 + 144889 0.67 0.987896
Target:  5'- cGggGCGAGACGcucGC-GCCGCUGGGc-- -3'
miRNA:   3'- -CuuUGUUUUGU---CGuCGGCGGCCUaga -5'
10971 5' -50.8 NC_002794.1 + 143007 0.66 0.99547
Target:  5'- aGGAACccggucAGCGuGCGGUCgGCCGGGUCg -3'
miRNA:   3'- -CUUUGuu----UUGU-CGUCGG-CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 142788 0.67 0.992928
Target:  5'- --uACGGcGCGuGCAGCCgcaguucgGCCGGGUCg -3'
miRNA:   3'- cuuUGUUuUGU-CGUCGG--------CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 142123 0.72 0.897763
Target:  5'- --uGCGAccCGGCGGCCgaccGCCGGGUCa -3'
miRNA:   3'- cuuUGUUuuGUCGUCGG----CGGCCUAGa -5'
10971 5' -50.8 NC_002794.1 + 141648 0.72 0.910656
Target:  5'- -cGGCGugGCcGCGGCCGCCGGcggGUCg -3'
miRNA:   3'- cuUUGUuuUGuCGUCGGCGGCC---UAGa -5'
10971 5' -50.8 NC_002794.1 + 139720 0.72 0.904334
Target:  5'- cGAGGaucaGGAACGGCAGCaCGCCGacGGUCa -3'
miRNA:   3'- -CUUUg---UUUUGUCGUCG-GCGGC--CUAGa -5'
10971 5' -50.8 NC_002794.1 + 139671 0.69 0.97566
Target:  5'- gGAcGCGAAuuuGCAGCCGCCGGc--- -3'
miRNA:   3'- -CUuUGUUUuguCGUCGGCGGCCuaga -5'
10971 5' -50.8 NC_002794.1 + 137447 0.67 0.990676
Target:  5'- uGGAACGAcuCGGCGGaauCCGCCGuGUCg -3'
miRNA:   3'- -CUUUGUUuuGUCGUC---GGCGGCcUAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.