Results 41 - 60 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10971 | 5' | -50.8 | NC_002794.1 | + | 121376 | 0.66 | 0.996707 |
Target: 5'- ---cCGAGcCGGCcGCCGCCGGGa-- -3' miRNA: 3'- cuuuGUUUuGUCGuCGGCGGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 188133 | 0.66 | 0.996707 |
Target: 5'- gGAGAUccAACAGCucuuccuccaGGUCgGCCGGGUCg -3' miRNA: 3'- -CUUUGuuUUGUCG----------UCGG-CGGCCUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 121031 | 0.66 | 0.996707 |
Target: 5'- aGAGGCcGGAgAGCGGCgCGUCGGGc-- -3' miRNA: 3'- -CUUUGuUUUgUCGUCG-GCGGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 117836 | 0.66 | 0.996707 |
Target: 5'- --cGCAGAGCAGCGGCa--CGGAg-- -3' miRNA: 3'- cuuUGUUUUGUCGUCGgcgGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 44487 | 0.66 | 0.996707 |
Target: 5'- cGAAACAGAgacguugucucACGGCGGCCcagaCCGGGc-- -3' miRNA: 3'- -CUUUGUUU-----------UGUCGUCGGc---GGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 190667 | 0.66 | 0.99547 |
Target: 5'- --cGCGcccGCcGC-GCCGCCGGGUCUc -3' miRNA: 3'- cuuUGUuu-UGuCGuCGGCGGCCUAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 38493 | 0.66 | 0.996067 |
Target: 5'- gGAAGCGcgGCGGCGccggucGCCGCCGccuccgcGAUCc -3' miRNA: 3'- -CUUUGUuuUGUCGU------CGGCGGC-------CUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 67723 | 0.66 | 0.994722 |
Target: 5'- aGggGCucggucccGGCGGCGGCCacccgagcCCGGAUCa -3' miRNA: 3'- -CuuUGuu------UUGUCGUCGGc-------GGCCUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 6922 | 0.66 | 0.995255 |
Target: 5'- -uGACcaGAAGCcGCAGCCGCCGcgcggcacccucucGGUCUc -3' miRNA: 3'- cuUUG--UUUUGuCGUCGGCGGC--------------CUAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 185737 | 0.66 | 0.994722 |
Target: 5'- cAAACAGAcacacACAcGCguccAGCCGCCGGcgCg -3' miRNA: 3'- cUUUGUUU-----UGU-CG----UCGGCGGCCuaGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 91999 | 0.66 | 0.994722 |
Target: 5'- cGggGCAGAACGGCGGCaGCgCGc-UCUa -3' miRNA: 3'- -CuuUGUUUUGUCGUCGgCG-GCcuAGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 42590 | 0.66 | 0.99547 |
Target: 5'- cGGAGgAGGGC-GCGGCgGCCGGGa-- -3' miRNA: 3'- -CUUUgUUUUGuCGUCGgCGGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 58407 | 0.66 | 0.99547 |
Target: 5'- uGGAGCAcgccAAGguGCGGCCGCCGc---- -3' miRNA: 3'- -CUUUGU----UUUguCGUCGGCGGCcuaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 61821 | 0.66 | 0.99547 |
Target: 5'- --------cCGGCGGCCGCCGGcggccggcGUCa -3' miRNA: 3'- cuuuguuuuGUCGUCGGCGGCC--------UAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 143007 | 0.66 | 0.99547 |
Target: 5'- aGGAACccggucAGCGuGCGGUCgGCCGGGUCg -3' miRNA: 3'- -CUUUGuu----UUGU-CGUCGG-CGGCCUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 145996 | 0.66 | 0.99547 |
Target: 5'- ---cCAGAACGGCcGCCgggGCCGGAg-- -3' miRNA: 3'- cuuuGUUUUGUCGuCGG---CGGCCUaga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 192001 | 0.66 | 0.99547 |
Target: 5'- cGGGACGGuAGCGGCGGUgGCCGcGG-CUg -3' miRNA: 3'- -CUUUGUU-UUGUCGUCGgCGGC-CUaGA- -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 37730 | 0.66 | 0.99547 |
Target: 5'- --cGCGAGcgGCGGC-GCCGCCGGcggCg -3' miRNA: 3'- cuuUGUUU--UGUCGuCGGCGGCCua-Ga -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 49014 | 0.66 | 0.99547 |
Target: 5'- --cGCGccGCGGCGGCCGCgGcGUCg -3' miRNA: 3'- cuuUGUuuUGUCGUCGGCGgCcUAGa -5' |
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10971 | 5' | -50.8 | NC_002794.1 | + | 33779 | 0.66 | 0.996129 |
Target: 5'- uGAAGCAcGACAGCcuguGCCGCCa----- -3' miRNA: 3'- -CUUUGUuUUGUCGu---CGGCGGccuaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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