miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10972 3' -55.3 NC_002794.1 + 134813 0.66 0.967856
Target:  5'- aCGaCGCCGcCGaucGGUCcagCGACAGCg -3'
miRNA:   3'- aGCaGCGGCaGUa--CCGGaa-GCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 149520 0.66 0.967856
Target:  5'- gUCGUCGCCGggagcGGaCCUggGGCGGa -3'
miRNA:   3'- -AGCAGCGGCagua-CC-GGAagCUGUCg -5'
10972 3' -55.3 NC_002794.1 + 799 0.66 0.967856
Target:  5'- cCGU-GCCGUCcgGGCggUCGGgAGg -3'
miRNA:   3'- aGCAgCGGCAGuaCCGgaAGCUgUCg -5'
10972 3' -55.3 NC_002794.1 + 17236 0.66 0.967856
Target:  5'- ---cCGCCGcCAccacCCUUCGACGGCg -3'
miRNA:   3'- agcaGCGGCaGUacc-GGAAGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 185080 0.66 0.964741
Target:  5'- cCGUCGCCGUagcaggcguacCAgccGGUCgugUUGuACAGCa -3'
miRNA:   3'- aGCAGCGGCA-----------GUa--CCGGa--AGC-UGUCG- -5'
10972 3' -55.3 NC_002794.1 + 62046 0.66 0.964741
Target:  5'- ---aCGCCcuGUCgGUGGCCgacgcCGGCGGCg -3'
miRNA:   3'- agcaGCGG--CAG-UACCGGaa---GCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 71213 0.66 0.964741
Target:  5'- cUCGUCGaagGUCccGGCCgcguagUGGCGGCc -3'
miRNA:   3'- -AGCAGCgg-CAGuaCCGGaa----GCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 126240 0.66 0.964741
Target:  5'- cCGUgGCgaUCGUGGCgCgcgaggUCGGCGGCu -3'
miRNA:   3'- aGCAgCGgcAGUACCG-Ga-----AGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 141023 0.66 0.964741
Target:  5'- uUCGgCGCCccGUCGaGGCCc-CGACGGUc -3'
miRNA:   3'- -AGCaGCGG--CAGUaCCGGaaGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 61805 0.66 0.964418
Target:  5'- cCGUCcCCGcUCAUcuccggcGGCCgcCGGCGGCc -3'
miRNA:   3'- aGCAGcGGC-AGUA-------CCGGaaGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 106967 0.66 0.96142
Target:  5'- gCGUCGCC-UCGcgcggcGGCCggcaCGGCGGUg -3'
miRNA:   3'- aGCAGCGGcAGUa-----CCGGaa--GCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 155414 0.66 0.96142
Target:  5'- cUCGacCGCCGUCAaGGCUUUCuGCAc- -3'
miRNA:   3'- -AGCa-GCGGCAGUaCCGGAAGcUGUcg -5'
10972 3' -55.3 NC_002794.1 + 119490 0.66 0.96142
Target:  5'- gUCGgcugCGUCcUCggGGUCgUCGGCGGCg -3'
miRNA:   3'- -AGCa---GCGGcAGuaCCGGaAGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 138573 0.66 0.96142
Target:  5'- gUCGUCGCuCGaUCGaGGCgCgUCGGCgcGGCg -3'
miRNA:   3'- -AGCAGCG-GC-AGUaCCG-GaAGCUG--UCG- -5'
10972 3' -55.3 NC_002794.1 + 120719 0.66 0.96142
Target:  5'- cCGUCGUucuuCGUCGUGGgCa-CGGCGGUc -3'
miRNA:   3'- aGCAGCG----GCAGUACCgGaaGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 152252 0.66 0.959327
Target:  5'- cCGUCGCCGUCGgacaGuacgccguccagaccGUCUUCGACuaccggaaccccGGCg -3'
miRNA:   3'- aGCAGCGGCAGUa---C---------------CGGAAGCUG------------UCG- -5'
10972 3' -55.3 NC_002794.1 + 37780 0.66 0.957889
Target:  5'- cCGUCGUCGUCGgccgcagGcGCCU-CGACGa- -3'
miRNA:   3'- aGCAGCGGCAGUa------C-CGGAaGCUGUcg -5'
10972 3' -55.3 NC_002794.1 + 93838 0.66 0.957889
Target:  5'- --aUCGCCGagaUCAUggacGGCCg-CGGCGGCg -3'
miRNA:   3'- agcAGCGGC---AGUA----CCGGaaGCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 44728 0.66 0.957889
Target:  5'- gUCGgccggCGCCGcCGgagGGCUaa-GACGGCg -3'
miRNA:   3'- -AGCa----GCGGCaGUa--CCGGaagCUGUCG- -5'
10972 3' -55.3 NC_002794.1 + 111764 0.66 0.957889
Target:  5'- gCGgCGCCGUCGgggcgGGCUcgUUCGuCAGg -3'
miRNA:   3'- aGCaGCGGCAGUa----CCGG--AAGCuGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.