miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10972 5' -50.4 NC_002794.1 + 187965 0.66 0.998986
Target:  5'- cGGGACcUCGGGaggccgcucauUGCGGGAGagacgaGCCGAa -3'
miRNA:   3'- -CCCUGcAGCUU-----------ACGCUCUUg-----UGGUUg -5'
10972 5' -50.4 NC_002794.1 + 100224 0.66 0.998986
Target:  5'- aGGGCGUCGAGgucuuCGAGGucgGCGUCAGCc -3'
miRNA:   3'- cCCUGCAGCUUac---GCUCU---UGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 38104 0.66 0.998986
Target:  5'- -cGGCGU-GAAgacGCGGGAgagccGCGCCAGCu -3'
miRNA:   3'- ccCUGCAgCUUa--CGCUCU-----UGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 158010 0.66 0.998986
Target:  5'- gGGGugG-CGGAUcaGCGAGAcgaAC-CCGAUu -3'
miRNA:   3'- -CCCugCaGCUUA--CGCUCU---UGuGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 89387 0.66 0.998986
Target:  5'- cGGGAgcgGUCGcg-GUGAGGuccguggaGCGCCGGCg -3'
miRNA:   3'- -CCCUg--CAGCuuaCGCUCU--------UGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 150609 0.66 0.998986
Target:  5'- cGGGCGcCGGcucUGCGGGAGCucgugaGCCAGu -3'
miRNA:   3'- cCCUGCaGCUu--ACGCUCUUG------UGGUUg -5'
10972 5' -50.4 NC_002794.1 + 92428 0.66 0.998986
Target:  5'- cGGGCGagGAcacgcuggccGUGCGGGGccGCGCgGACu -3'
miRNA:   3'- cCCUGCagCU----------UACGCUCU--UGUGgUUG- -5'
10972 5' -50.4 NC_002794.1 + 176250 0.66 0.998986
Target:  5'- ---cCGUCGAugGUGcCGAGAGCccaucccucGCCAGCa -3'
miRNA:   3'- cccuGCAGCU--UAC-GCUCUUG---------UGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 189482 0.66 0.998986
Target:  5'- cGGGCGUCGuGUGCacccagcuGGGCACCu-- -3'
miRNA:   3'- cCCUGCAGCuUACGcu------CUUGUGGuug -5'
10972 5' -50.4 NC_002794.1 + 147126 0.66 0.99884
Target:  5'- -aGACGUCGAcgGCGguucgagacggccccGGGGCcgcgaggGCCAGCu -3'
miRNA:   3'- ccCUGCAGCUuaCGC---------------UCUUG-------UGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 139998 0.66 0.998772
Target:  5'- cGGGACGgugCGggUG-GAGGcCGCgGAg -3'
miRNA:   3'- -CCCUGCa--GCuuACgCUCUuGUGgUUg -5'
10972 5' -50.4 NC_002794.1 + 8779 0.66 0.998772
Target:  5'- -cGGCGUgGGAgcUGCaGGAACACCAcACg -3'
miRNA:   3'- ccCUGCAgCUU--ACGcUCUUGUGGU-UG- -5'
10972 5' -50.4 NC_002794.1 + 8440 0.66 0.998772
Target:  5'- gGGGGCGggUGAAaaGCGGGGACcugacCCGGCu -3'
miRNA:   3'- -CCCUGCa-GCUUa-CGCUCUUGu----GGUUG- -5'
10972 5' -50.4 NC_002794.1 + 128382 0.66 0.998772
Target:  5'- cGGACGUCucgccgaucccgGAuggGCGAGGGgACCGGg -3'
miRNA:   3'- cCCUGCAG------------CUua-CGCUCUUgUGGUUg -5'
10972 5' -50.4 NC_002794.1 + 107140 0.66 0.998772
Target:  5'- cGGGAacgaCGUCGGcgcccccgGCGAGGGcCGCCGcuACg -3'
miRNA:   3'- -CCCU----GCAGCUua------CGCUCUU-GUGGU--UG- -5'
10972 5' -50.4 NC_002794.1 + 111092 0.66 0.998626
Target:  5'- aGGGuCGgCGGGcccgGCGGGAccguggccgucgacgGCGCCGGCg -3'
miRNA:   3'- -CCCuGCaGCUUa---CGCUCU---------------UGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 98734 0.66 0.99852
Target:  5'- ----gGUCGAGccGCugGAGAACACCGACu -3'
miRNA:   3'- cccugCAGCUUa-CG--CUCUUGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 96304 0.66 0.99852
Target:  5'- -uGGCGUaCGccUGCGAcAACGCCGGCa -3'
miRNA:   3'- ccCUGCA-GCuuACGCUcUUGUGGUUG- -5'
10972 5' -50.4 NC_002794.1 + 147372 0.66 0.99852
Target:  5'- -uGACGUCucGUGCGA--GCugCAGCu -3'
miRNA:   3'- ccCUGCAGcuUACGCUcuUGugGUUG- -5'
10972 5' -50.4 NC_002794.1 + 130161 0.66 0.998227
Target:  5'- cGGGAUcaCGcgcGCGAGAgccgccGCACCGGCu -3'
miRNA:   3'- -CCCUGcaGCuuaCGCUCU------UGUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.