miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 107224 0.66 0.998224
Target:  5'- ----cGGGCGGcGcGCGAcgggGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUC-CuCGCU----UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 13258 0.66 0.998224
Target:  5'- cCUCGccGGGCugugguGGAGCGGccgcuguugacGGCGGCAUg -3'
miRNA:   3'- -GAGUa-UUUGu-----CCUCGCU-----------UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 40990 0.66 0.998191
Target:  5'- uCUCGUGAgguccgcguucccGCAGGAugGCGGAGacgaGGCGc- -3'
miRNA:   3'- -GAGUAUU-------------UGUCCU--CGCUUCg---CCGUag -5'
10973 3' -50.3 NC_002794.1 + 3551 0.66 0.997874
Target:  5'- gUCA---ACAGGAuGgGggGCGGUcaAUCg -3'
miRNA:   3'- gAGUauuUGUCCU-CgCuuCGCCG--UAG- -5'
10973 3' -50.3 NC_002794.1 + 42408 0.66 0.997836
Target:  5'- gCUCGUcguuGAaacACAGGAGCGu-GCGGUugaacucGUCg -3'
miRNA:   3'- -GAGUA----UU---UGUCCUCGCuuCGCCG-------UAG- -5'
10973 3' -50.3 NC_002794.1 + 110602 0.66 0.997638
Target:  5'- -gCGUGAACGugaagcGGAGCGGgagccgcggcgccgcGGCGGCGg- -3'
miRNA:   3'- gaGUAUUUGU------CCUCGCU---------------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 117983 0.66 0.997469
Target:  5'- gCUgGUGguacAGCAGGGGCuGccGCGGCAg- -3'
miRNA:   3'- -GAgUAU----UUGUCCUCG-CuuCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 116170 0.66 0.997001
Target:  5'- -cCGUGGGCAGGGGU-AAGuCGGgAUCu -3'
miRNA:   3'- gaGUAUUUGUCCUCGcUUC-GCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 142198 0.66 0.997001
Target:  5'- -gCAgu-GCGGGaAGCGGcGGCGGCAg- -3'
miRNA:   3'- gaGUauuUGUCC-UCGCU-UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 142937 0.66 0.997001
Target:  5'- ----gAAGCAGGuGGcCGAggggaagucGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUCC-UC-GCU---------UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 123317 0.66 0.997001
Target:  5'- uUCGagcAGCAGGGGCcgcagcugGggGUGGCGUUc -3'
miRNA:   3'- gAGUau-UUGUCCUCG--------CuuCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 184973 0.66 0.997001
Target:  5'- gCUCGUcGGGCAGcacgcagcGcGCGAAGCGGCGg- -3'
miRNA:   3'- -GAGUA-UUUGUC--------CuCGCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 191444 0.66 0.997001
Target:  5'- uCUCAcaccGGACGGGAacaacccgcuucGCGAcccAGCGGCAg- -3'
miRNA:   3'- -GAGUa---UUUGUCCU------------CGCU---UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 108383 0.66 0.99695
Target:  5'- -gCcgGAGCgGGGAGCGGaggcuccGGCGGCGg- -3'
miRNA:   3'- gaGuaUUUG-UCCUCGCU-------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 104472 0.66 0.996463
Target:  5'- -gCGUGuGCAGGAuGCGGgcggccacGGCGGCcggGUCg -3'
miRNA:   3'- gaGUAUuUGUCCU-CGCU--------UCGCCG---UAG- -5'
10973 3' -50.3 NC_002794.1 + 120044 0.66 0.996463
Target:  5'- gUCAU-GACGGcGGCGGuGGCGGCcgCg -3'
miRNA:   3'- gAGUAuUUGUCcUCGCU-UCGCCGuaG- -5'
10973 3' -50.3 NC_002794.1 + 157989 0.66 0.996463
Target:  5'- gCUCAUuuGACcGGAGCcgguGggGUGGCGgaUCa -3'
miRNA:   3'- -GAGUAu-UUGuCCUCG----CuuCGCCGU--AG- -5'
10973 3' -50.3 NC_002794.1 + 76775 0.66 0.996463
Target:  5'- cCUCGUAGAaguccgagcCGGGcgGGCGA-GCGGCGa- -3'
miRNA:   3'- -GAGUAUUU---------GUCC--UCGCUuCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 601 0.66 0.996463
Target:  5'- uUCGUGGcCGGGuGCGGucaGGCGGCc-- -3'
miRNA:   3'- gAGUAUUuGUCCuCGCU---UCGCCGuag -5'
10973 3' -50.3 NC_002794.1 + 45627 0.66 0.995849
Target:  5'- uCUCGUAcccgaAACAGuGGuCGGAGUGGCAg- -3'
miRNA:   3'- -GAGUAU-----UUGUCcUC-GCUUCGCCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.