Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10973 | 3' | -50.3 | NC_002794.1 | + | 184973 | 0.66 | 0.997001 |
Target: 5'- gCUCGUcGGGCAGcacgcagcGcGCGAAGCGGCGg- -3' miRNA: 3'- -GAGUA-UUUGUC--------CuCGCUUCGCCGUag -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 123317 | 0.66 | 0.997001 |
Target: 5'- uUCGagcAGCAGGGGCcgcagcugGggGUGGCGUUc -3' miRNA: 3'- gAGUau-UUGUCCUCG--------CuuCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 190752 | 0.67 | 0.992464 |
Target: 5'- uCUCG---ACGGGGGCG--GCGGCcgCg -3' miRNA: 3'- -GAGUauuUGUCCUCGCuuCGCCGuaG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 4343 | 0.67 | 0.993466 |
Target: 5'- uUCAc--GCAGGuGUGcGGUGGCGUCc -3' miRNA: 3'- gAGUauuUGUCCuCGCuUCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 147926 | 0.67 | 0.993466 |
Target: 5'- gCUCAgcGACGGGGGCGucGUGuacGCGUa -3' miRNA: 3'- -GAGUauUUGUCCUCGCuuCGC---CGUAg -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 115912 | 0.67 | 0.991343 |
Target: 5'- uUCGUGGGguGGAcuugGCGcGGCGGCGg- -3' miRNA: 3'- gAGUAUUUguCCU----CGCuUCGCCGUag -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 185685 | 0.67 | 0.992464 |
Target: 5'- cCUCAgAGGCAGGAGgGggGaaGCGa- -3' miRNA: 3'- -GAGUaUUUGUCCUCgCuuCgcCGUag -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 95010 | 0.67 | 0.993466 |
Target: 5'- gUCGcuGAUGGG-GCGGcuguGCGGCAUCu -3' miRNA: 3'- gAGUauUUGUCCuCGCUu---CGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 117066 | 0.67 | 0.993466 |
Target: 5'- -cCGUGAGCcucGGGuacGGCGGcAGCGGCGUg -3' miRNA: 3'- gaGUAUUUG---UCC---UCGCU-UCGCCGUAg -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 49604 | 0.67 | 0.994359 |
Target: 5'- aUCGgcGACGGcGGGCGccGGCGGCGccUCg -3' miRNA: 3'- gAGUauUUGUC-CUCGCu-UCGCCGU--AG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 40529 | 0.67 | 0.994274 |
Target: 5'- -gCGccGACGGGAGaCGAgggggccGGCGGCAUg -3' miRNA: 3'- gaGUauUUGUCCUC-GCU-------UCGCCGUAg -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 119430 | 0.67 | 0.994359 |
Target: 5'- uCUCGcagguccGACGGcGGCGGcgguGGCGGCGUCg -3' miRNA: 3'- -GAGUau-----UUGUCcUCGCU----UCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 129223 | 0.67 | 0.99515 |
Target: 5'- --gGUGGAUAGGcGCGAacgGGCGGC-UCc -3' miRNA: 3'- gagUAUUUGUCCuCGCU---UCGCCGuAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 105005 | 0.68 | 0.987177 |
Target: 5'- cCUCcuUGAGCAGGAG-GGAGCGGa--- -3' miRNA: 3'- -GAGu-AUUUGUCCUCgCUUCGCCguag -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 195374 | 0.68 | 0.987177 |
Target: 5'- aCUCGUAcugcGCGaacGAGUGAgucAGCGGCAUCc -3' miRNA: 3'- -GAGUAUu---UGUc--CUCGCU---UCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 191862 | 0.68 | 0.98928 |
Target: 5'- gUCGUGAAaggccggcggcggaGGGGGCGGcggaGGCGGgAUCg -3' miRNA: 3'- gAGUAUUUg-------------UCCUCGCU----UCGCCgUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 87349 | 0.68 | 0.988708 |
Target: 5'- -cCAgcAGCGGGuccGGCGGcgAGCGGCGUUc -3' miRNA: 3'- gaGUauUUGUCC---UCGCU--UCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 55288 | 0.68 | 0.988708 |
Target: 5'- -gCGgcGACGaGGGCGGcGGCGGCGUCg -3' miRNA: 3'- gaGUauUUGUcCUCGCU-UCGCCGUAG- -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 43906 | 0.68 | 0.990094 |
Target: 5'- uCUCGUG---AGGAGCGgcGCGGuCAg- -3' miRNA: 3'- -GAGUAUuugUCCUCGCuuCGCC-GUag -5' |
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10973 | 3' | -50.3 | NC_002794.1 | + | 190431 | 0.68 | 0.986184 |
Target: 5'- -cCAgcAGCAGGuGCGAcacgaaauacgugcGCGGCGUCg -3' miRNA: 3'- gaGUauUUGUCCuCGCUu-------------CGCCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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