miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 52637 0.77 0.707109
Target:  5'- -gCGUcGAACGGGAGcCGGAGCGGCGg- -3'
miRNA:   3'- gaGUA-UUUGUCCUC-GCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 82041 0.76 0.73781
Target:  5'- -gCGUGGGCGGcGGCGGcGGCGGCGUCg -3'
miRNA:   3'- gaGUAUUUGUCcUCGCU-UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 37879 0.76 0.747861
Target:  5'- uCUCGggcGGCGGGGGCGGuggcGGCGGCAg- -3'
miRNA:   3'- -GAGUau-UUGUCCUCGCU----UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 141452 0.75 0.79628
Target:  5'- -------cCGGGAGCGgcGCGGCGUCc -3'
miRNA:   3'- gaguauuuGUCCUCGCuuCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 129627 0.72 0.907491
Target:  5'- aUCGUAccCAcGGAGCGGAGCGGaCcgCg -3'
miRNA:   3'- gAGUAUuuGU-CCUCGCUUCGCC-GuaG- -5'
10973 3' -50.3 NC_002794.1 + 115967 0.71 0.940454
Target:  5'- -cCGUGGGgGGGAGCGGgacggggAGCGGCGc- -3'
miRNA:   3'- gaGUAUUUgUCCUCGCU-------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 132492 0.71 0.940936
Target:  5'- gUCgAUGAACGauGGCGuGGCGGCAUCg -3'
miRNA:   3'- gAG-UAUUUGUccUCGCuUCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 115034 0.7 0.958177
Target:  5'- -cCGUcuGCAGGuGCGAccgGGCGGCGg- -3'
miRNA:   3'- gaGUAuuUGUCCuCGCU---UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 86926 0.69 0.971606
Target:  5'- -cCGU-GGCGGGcaGGCGggGCGGgAUCc -3'
miRNA:   3'- gaGUAuUUGUCC--UCGCuuCGCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 149453 0.69 0.971606
Target:  5'- uCUCGgggaaggGGGCggucgAGGAGCGAgggggGGCGGCAUg -3'
miRNA:   3'- -GAGUa------UUUG-----UCCUCGCU-----UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 138282 0.69 0.971606
Target:  5'- ----cAGAUAGGAGCGGguGGCGGCcUUg -3'
miRNA:   3'- gaguaUUUGUCCUCGCU--UCGCCGuAG- -5'
10973 3' -50.3 NC_002794.1 + 93898 0.69 0.974411
Target:  5'- uUCGUGgacgGACAGGAGUGccuAGCcGCGUCc -3'
miRNA:   3'- gAGUAU----UUGUCCUCGCu--UCGcCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 48422 0.69 0.979175
Target:  5'- uCUCAcGGAUAGG-GCGGagguggcGGCGGcCAUCg -3'
miRNA:   3'- -GAGUaUUUGUCCuCGCU-------UCGCC-GUAG- -5'
10973 3' -50.3 NC_002794.1 + 183421 0.69 0.979406
Target:  5'- -cCAgAAGCGGGAGCGgGAGCGGgAc- -3'
miRNA:   3'- gaGUaUUUGUCCUCGC-UUCGCCgUag -5'
10973 3' -50.3 NC_002794.1 + 66972 0.69 0.979406
Target:  5'- gCUCGcc-GgGGGAGCGucGCGaGCAUCu -3'
miRNA:   3'- -GAGUauuUgUCCUCGCuuCGC-CGUAG- -5'
10973 3' -50.3 NC_002794.1 + 184051 0.69 0.981614
Target:  5'- -gCGgucGCGGGccgcGGCGAAGCGGCAc- -3'
miRNA:   3'- gaGUauuUGUCC----UCGCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 179945 0.68 0.983638
Target:  5'- gUCGcGGGCcgGGGAGCGAgcgacagcaggAGCGGCAg- -3'
miRNA:   3'- gAGUaUUUG--UCCUCGCU-----------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 32871 0.68 0.985312
Target:  5'- -----cGGCGGGcGGCGGcggcggcGGCGGCAUCa -3'
miRNA:   3'- gaguauUUGUCC-UCGCU-------UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 190970 0.68 0.98549
Target:  5'- cCUCGgggcagcaGAGCAGGcAGCGcGGCgacGGCGUCg -3'
miRNA:   3'- -GAGUa-------UUUGUCC-UCGCuUCG---CCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 96557 0.68 0.98549
Target:  5'- --gGUcGACgAGGAGCgGGAGCGGCugGUCg -3'
miRNA:   3'- gagUAuUUG-UCCUCG-CUUCGCCG--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.