miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 45627 0.66 0.995849
Target:  5'- uCUCGUAcccgaAACAGuGGuCGGAGUGGCAg- -3'
miRNA:   3'- -GAGUAU-----UUGUCcUC-GCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 38481 0.66 0.995849
Target:  5'- uUUAUGGGCggAGGaAGCGcGGCGGCGc- -3'
miRNA:   3'- gAGUAUUUG--UCC-UCGCuUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 129223 0.67 0.99515
Target:  5'- --gGUGGAUAGGcGCGAacgGGCGGC-UCc -3'
miRNA:   3'- gagUAUUUGUCCuCGCU---UCGCCGuAG- -5'
10973 3' -50.3 NC_002794.1 + 119430 0.67 0.994359
Target:  5'- uCUCGcagguccGACGGcGGCGGcgguGGCGGCGUCg -3'
miRNA:   3'- -GAGUau-----UUGUCcUCGCU----UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 49604 0.67 0.994359
Target:  5'- aUCGgcGACGGcGGGCGccGGCGGCGccUCg -3'
miRNA:   3'- gAGUauUUGUC-CUCGCu-UCGCCGU--AG- -5'
10973 3' -50.3 NC_002794.1 + 40529 0.67 0.994274
Target:  5'- -gCGccGACGGGAGaCGAgggggccGGCGGCAUg -3'
miRNA:   3'- gaGUauUUGUCCUC-GCU-------UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 147926 0.67 0.993466
Target:  5'- gCUCAgcGACGGGGGCGucGUGuacGCGUa -3'
miRNA:   3'- -GAGUauUUGUCCUCGCuuCGC---CGUAg -5'
10973 3' -50.3 NC_002794.1 + 4343 0.67 0.993466
Target:  5'- uUCAc--GCAGGuGUGcGGUGGCGUCc -3'
miRNA:   3'- gAGUauuUGUCCuCGCuUCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 95010 0.67 0.993466
Target:  5'- gUCGcuGAUGGG-GCGGcuguGCGGCAUCu -3'
miRNA:   3'- gAGUauUUGUCCuCGCUu---CGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 117066 0.67 0.993466
Target:  5'- -cCGUGAGCcucGGGuacGGCGGcAGCGGCGUg -3'
miRNA:   3'- gaGUAUUUG---UCC---UCGCU-UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 185685 0.67 0.992464
Target:  5'- cCUCAgAGGCAGGAGgGggGaaGCGa- -3'
miRNA:   3'- -GAGUaUUUGUCCUCgCuuCgcCGUag -5'
10973 3' -50.3 NC_002794.1 + 190752 0.67 0.992464
Target:  5'- uCUCG---ACGGGGGCG--GCGGCcgCg -3'
miRNA:   3'- -GAGUauuUGUCCUCGCuuCGCCGuaG- -5'
10973 3' -50.3 NC_002794.1 + 115912 0.67 0.991343
Target:  5'- uUCGUGGGguGGAcuugGCGcGGCGGCGg- -3'
miRNA:   3'- gAGUAUUUguCCU----CGCuUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 43906 0.68 0.990094
Target:  5'- uCUCGUG---AGGAGCGgcGCGGuCAg- -3'
miRNA:   3'- -GAGUAUuugUCCUCGCuuCGCC-GUag -5'
10973 3' -50.3 NC_002794.1 + 142393 0.68 0.990094
Target:  5'- ----gAGACGGcGGUGcAGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUCcUCGC-UUCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 191862 0.68 0.98928
Target:  5'- gUCGUGAAaggccggcggcggaGGGGGCGGcggaGGCGGgAUCg -3'
miRNA:   3'- gAGUAUUUg-------------UCCUCGCU----UCGCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 55288 0.68 0.988708
Target:  5'- -gCGgcGACGaGGGCGGcGGCGGCGUCg -3'
miRNA:   3'- gaGUauUUGUcCUCGCU-UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 87349 0.68 0.988708
Target:  5'- -cCAgcAGCGGGuccGGCGGcgAGCGGCGUUc -3'
miRNA:   3'- gaGUauUUGUCC---UCGCU--UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 195374 0.68 0.987177
Target:  5'- aCUCGUAcugcGCGaacGAGUGAgucAGCGGCAUCc -3'
miRNA:   3'- -GAGUAUu---UGUc--CUCGCU---UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 105005 0.68 0.987177
Target:  5'- cCUCcuUGAGCAGGAG-GGAGCGGa--- -3'
miRNA:   3'- -GAGu-AUUUGUCCUCgCUUCGCCguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.