miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 601 0.66 0.996463
Target:  5'- uUCGUGGcCGGGuGCGGucaGGCGGCc-- -3'
miRNA:   3'- gAGUAUUuGUCCuCGCU---UCGCCGuag -5'
10973 3' -50.3 NC_002794.1 + 2704 0.66 0.995849
Target:  5'- -aCGUGuuCAGGGGCGGucuggGGCGGUc-- -3'
miRNA:   3'- gaGUAUuuGUCCUCGCU-----UCGCCGuag -5'
10973 3' -50.3 NC_002794.1 + 3551 0.66 0.997874
Target:  5'- gUCA---ACAGGAuGgGggGCGGUcaAUCg -3'
miRNA:   3'- gAGUauuUGUCCU-CgCuuCGCCG--UAG- -5'
10973 3' -50.3 NC_002794.1 + 4343 0.67 0.993466
Target:  5'- uUCAc--GCAGGuGUGcGGUGGCGUCc -3'
miRNA:   3'- gAGUauuUGUCCuCGCuUCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 13258 0.66 0.998224
Target:  5'- cCUCGccGGGCugugguGGAGCGGccgcuguugacGGCGGCAUg -3'
miRNA:   3'- -GAGUa-UUUGu-----CCUCGCU-----------UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 32871 0.68 0.985312
Target:  5'- -----cGGCGGGcGGCGGcggcggcGGCGGCAUCa -3'
miRNA:   3'- gaguauUUGUCC-UCGCU-------UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 37879 0.76 0.747861
Target:  5'- uCUCGggcGGCGGGGGCGGuggcGGCGGCAg- -3'
miRNA:   3'- -GAGUau-UUGUCCUCGCU----UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 38481 0.66 0.995849
Target:  5'- uUUAUGGGCggAGGaAGCGcGGCGGCGc- -3'
miRNA:   3'- gAGUAUUUG--UCC-UCGCuUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 40529 0.67 0.994274
Target:  5'- -gCGccGACGGGAGaCGAgggggccGGCGGCAUg -3'
miRNA:   3'- gaGUauUUGUCCUC-GCU-------UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 40990 0.66 0.998191
Target:  5'- uCUCGUGAgguccgcguucccGCAGGAugGCGGAGacgaGGCGc- -3'
miRNA:   3'- -GAGUAUU-------------UGUCCU--CGCUUCg---CCGUag -5'
10973 3' -50.3 NC_002794.1 + 42408 0.66 0.997836
Target:  5'- gCUCGUcguuGAaacACAGGAGCGu-GCGGUugaacucGUCg -3'
miRNA:   3'- -GAGUA----UU---UGUCCUCGCuuCGCCG-------UAG- -5'
10973 3' -50.3 NC_002794.1 + 43906 0.68 0.990094
Target:  5'- uCUCGUG---AGGAGCGgcGCGGuCAg- -3'
miRNA:   3'- -GAGUAUuugUCCUCGCuuCGCC-GUag -5'
10973 3' -50.3 NC_002794.1 + 45627 0.66 0.995849
Target:  5'- uCUCGUAcccgaAACAGuGGuCGGAGUGGCAg- -3'
miRNA:   3'- -GAGUAU-----UUGUCcUC-GCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 48422 0.69 0.979175
Target:  5'- uCUCAcGGAUAGG-GCGGagguggcGGCGGcCAUCg -3'
miRNA:   3'- -GAGUaUUUGUCCuCGCU-------UCGCC-GUAG- -5'
10973 3' -50.3 NC_002794.1 + 49604 0.67 0.994359
Target:  5'- aUCGgcGACGGcGGGCGccGGCGGCGccUCg -3'
miRNA:   3'- gAGUauUUGUC-CUCGCu-UCGCCGU--AG- -5'
10973 3' -50.3 NC_002794.1 + 52637 0.77 0.707109
Target:  5'- -gCGUcGAACGGGAGcCGGAGCGGCGg- -3'
miRNA:   3'- gaGUA-UUUGUCCUC-GCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 55288 0.68 0.988708
Target:  5'- -gCGgcGACGaGGGCGGcGGCGGCGUCg -3'
miRNA:   3'- gaGUauUUGUcCUCGCU-UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 66972 0.69 0.979406
Target:  5'- gCUCGcc-GgGGGAGCGucGCGaGCAUCu -3'
miRNA:   3'- -GAGUauuUgUCCUCGCuuCGC-CGUAG- -5'
10973 3' -50.3 NC_002794.1 + 76775 0.66 0.996463
Target:  5'- cCUCGUAGAaguccgagcCGGGcgGGCGA-GCGGCGa- -3'
miRNA:   3'- -GAGUAUUU---------GUCC--UCGCUuCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 82041 0.76 0.73781
Target:  5'- -gCGUGGGCGGcGGCGGcGGCGGCGUCg -3'
miRNA:   3'- gaGUAUUUGUCcUCGCU-UCGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.