miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 86926 0.69 0.971606
Target:  5'- -cCGU-GGCGGGcaGGCGggGCGGgAUCc -3'
miRNA:   3'- gaGUAuUUGUCC--UCGCuuCGCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 87349 0.68 0.988708
Target:  5'- -cCAgcAGCGGGuccGGCGGcgAGCGGCGUUc -3'
miRNA:   3'- gaGUauUUGUCC---UCGCU--UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 93898 0.69 0.974411
Target:  5'- uUCGUGgacgGACAGGAGUGccuAGCcGCGUCc -3'
miRNA:   3'- gAGUAU----UUGUCCUCGCu--UCGcCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 95010 0.67 0.993466
Target:  5'- gUCGcuGAUGGG-GCGGcuguGCGGCAUCu -3'
miRNA:   3'- gAGUauUUGUCCuCGCUu---CGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 95743 0.68 0.98549
Target:  5'- ---uUGGACGGGGcugguacucGCGggGCGGCGg- -3'
miRNA:   3'- gaguAUUUGUCCU---------CGCuuCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 96557 0.68 0.98549
Target:  5'- --gGUcGACgAGGAGCgGGAGCGGCugGUCg -3'
miRNA:   3'- gagUAuUUG-UCCUCG-CUUCGCCG--UAG- -5'
10973 3' -50.3 NC_002794.1 + 104472 0.66 0.996463
Target:  5'- -gCGUGuGCAGGAuGCGGgcggccacGGCGGCcggGUCg -3'
miRNA:   3'- gaGUAUuUGUCCU-CGCU--------UCGCCG---UAG- -5'
10973 3' -50.3 NC_002794.1 + 105005 0.68 0.987177
Target:  5'- cCUCcuUGAGCAGGAG-GGAGCGGa--- -3'
miRNA:   3'- -GAGu-AUUUGUCCUCgCUUCGCCguag -5'
10973 3' -50.3 NC_002794.1 + 107224 0.66 0.998224
Target:  5'- ----cGGGCGGcGcGCGAcgggGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUC-CuCGCU----UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 108383 0.66 0.99695
Target:  5'- -gCcgGAGCgGGGAGCGGaggcuccGGCGGCGg- -3'
miRNA:   3'- gaGuaUUUG-UCCUCGCU-------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 110602 0.66 0.997638
Target:  5'- -gCGUGAACGugaagcGGAGCGGgagccgcggcgccgcGGCGGCGg- -3'
miRNA:   3'- gaGUAUUUGU------CCUCGCU---------------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 115034 0.7 0.958177
Target:  5'- -cCGUcuGCAGGuGCGAccgGGCGGCGg- -3'
miRNA:   3'- gaGUAuuUGUCCuCGCU---UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 115912 0.67 0.991343
Target:  5'- uUCGUGGGguGGAcuugGCGcGGCGGCGg- -3'
miRNA:   3'- gAGUAUUUguCCU----CGCuUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 115967 0.71 0.940454
Target:  5'- -cCGUGGGgGGGAGCGGgacggggAGCGGCGc- -3'
miRNA:   3'- gaGUAUUUgUCCUCGCU-------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 116170 0.66 0.997001
Target:  5'- -cCGUGGGCAGGGGU-AAGuCGGgAUCu -3'
miRNA:   3'- gaGUAUUUGUCCUCGcUUC-GCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 117066 0.67 0.993466
Target:  5'- -cCGUGAGCcucGGGuacGGCGGcAGCGGCGUg -3'
miRNA:   3'- gaGUAUUUG---UCC---UCGCU-UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 117983 0.66 0.997469
Target:  5'- gCUgGUGguacAGCAGGGGCuGccGCGGCAg- -3'
miRNA:   3'- -GAgUAU----UUGUCCUCG-CuuCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 119430 0.67 0.994359
Target:  5'- uCUCGcagguccGACGGcGGCGGcgguGGCGGCGUCg -3'
miRNA:   3'- -GAGUau-----UUGUCcUCGCU----UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 120044 0.66 0.996463
Target:  5'- gUCAU-GACGGcGGCGGuGGCGGCcgCg -3'
miRNA:   3'- gAGUAuUUGUCcUCGCU-UCGCCGuaG- -5'
10973 3' -50.3 NC_002794.1 + 123317 0.66 0.997001
Target:  5'- uUCGagcAGCAGGGGCcgcagcugGggGUGGCGUUc -3'
miRNA:   3'- gAGUau-UUGUCCUCG--------CuuCGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.