miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 3' -50.3 NC_002794.1 + 195374 0.68 0.987177
Target:  5'- aCUCGUAcugcGCGaacGAGUGAgucAGCGGCAUCc -3'
miRNA:   3'- -GAGUAUu---UGUc--CUCGCU---UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 191862 0.68 0.98928
Target:  5'- gUCGUGAAaggccggcggcggaGGGGGCGGcggaGGCGGgAUCg -3'
miRNA:   3'- gAGUAUUUg-------------UCCUCGCU----UCGCCgUAG- -5'
10973 3' -50.3 NC_002794.1 + 191444 0.66 0.997001
Target:  5'- uCUCAcaccGGACGGGAacaacccgcuucGCGAcccAGCGGCAg- -3'
miRNA:   3'- -GAGUa---UUUGUCCU------------CGCU---UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 190970 0.68 0.98549
Target:  5'- cCUCGgggcagcaGAGCAGGcAGCGcGGCgacGGCGUCg -3'
miRNA:   3'- -GAGUa-------UUUGUCC-UCGCuUCG---CCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 190752 0.67 0.992464
Target:  5'- uCUCG---ACGGGGGCG--GCGGCcgCg -3'
miRNA:   3'- -GAGUauuUGUCCUCGCuuCGCCGuaG- -5'
10973 3' -50.3 NC_002794.1 + 190431 0.68 0.986184
Target:  5'- -cCAgcAGCAGGuGCGAcacgaaauacgugcGCGGCGUCg -3'
miRNA:   3'- gaGUauUUGUCCuCGCUu-------------CGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 185685 0.67 0.992464
Target:  5'- cCUCAgAGGCAGGAGgGggGaaGCGa- -3'
miRNA:   3'- -GAGUaUUUGUCCUCgCuuCgcCGUag -5'
10973 3' -50.3 NC_002794.1 + 184973 0.66 0.997001
Target:  5'- gCUCGUcGGGCAGcacgcagcGcGCGAAGCGGCGg- -3'
miRNA:   3'- -GAGUA-UUUGUC--------CuCGCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 184051 0.69 0.981614
Target:  5'- -gCGgucGCGGGccgcGGCGAAGCGGCAc- -3'
miRNA:   3'- gaGUauuUGUCC----UCGCUUCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 183421 0.69 0.979406
Target:  5'- -cCAgAAGCGGGAGCGgGAGCGGgAc- -3'
miRNA:   3'- gaGUaUUUGUCCUCGC-UUCGCCgUag -5'
10973 3' -50.3 NC_002794.1 + 179945 0.68 0.983638
Target:  5'- gUCGcGGGCcgGGGAGCGAgcgacagcaggAGCGGCAg- -3'
miRNA:   3'- gAGUaUUUG--UCCUCGCU-----------UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 157989 0.66 0.996463
Target:  5'- gCUCAUuuGACcGGAGCcgguGggGUGGCGgaUCa -3'
miRNA:   3'- -GAGUAu-UUGuCCUCG----CuuCGCCGU--AG- -5'
10973 3' -50.3 NC_002794.1 + 149453 0.69 0.971606
Target:  5'- uCUCGgggaaggGGGCggucgAGGAGCGAgggggGGCGGCAUg -3'
miRNA:   3'- -GAGUa------UUUG-----UCCUCGCU-----UCGCCGUAg -5'
10973 3' -50.3 NC_002794.1 + 147926 0.67 0.993466
Target:  5'- gCUCAgcGACGGGGGCGucGUGuacGCGUa -3'
miRNA:   3'- -GAGUauUUGUCCUCGCuuCGC---CGUAg -5'
10973 3' -50.3 NC_002794.1 + 142937 0.66 0.997001
Target:  5'- ----gAAGCAGGuGGcCGAggggaagucGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUCC-UC-GCU---------UCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 142393 0.68 0.990094
Target:  5'- ----gAGACGGcGGUGcAGGCGGCGUCg -3'
miRNA:   3'- gaguaUUUGUCcUCGC-UUCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 142198 0.66 0.997001
Target:  5'- -gCAgu-GCGGGaAGCGGcGGCGGCAg- -3'
miRNA:   3'- gaGUauuUGUCC-UCGCU-UCGCCGUag -5'
10973 3' -50.3 NC_002794.1 + 141452 0.75 0.79628
Target:  5'- -------cCGGGAGCGgcGCGGCGUCc -3'
miRNA:   3'- gaguauuuGUCCUCGCuuCGCCGUAG- -5'
10973 3' -50.3 NC_002794.1 + 138282 0.69 0.971606
Target:  5'- ----cAGAUAGGAGCGGguGGCGGCcUUg -3'
miRNA:   3'- gaguaUUUGUCCUCGCU--UCGCCGuAG- -5'
10973 3' -50.3 NC_002794.1 + 132492 0.71 0.940936
Target:  5'- gUCgAUGAACGauGGCGuGGCGGCAUCg -3'
miRNA:   3'- gAG-UAUUUGUccUCGCuUCGCCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.