miRNA display CGI


Results 1 - 20 of 318 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 90201 0.66 0.818007
Target:  5'- aCGGuGcCCGCgccuccgC-CCGCCGCGCCGGa- -3'
miRNA:   3'- -GUUuC-GGCGa------GaGGCGGCGCGGCUgc -5'
10973 5' -60.3 NC_002794.1 + 193296 0.66 0.818007
Target:  5'- --uAGUCGCcgUCCGCucCGCGCCGcACGc -3'
miRNA:   3'- guuUCGGCGagAGGCG--GCGCGGC-UGC- -5'
10973 5' -60.3 NC_002794.1 + 67544 0.66 0.818007
Target:  5'- -uGAGCC-CUCcgCCcggGCCGCGCCGcACc -3'
miRNA:   3'- guUUCGGcGAGa-GG---CGGCGCGGC-UGc -5'
10973 5' -60.3 NC_002794.1 + 57972 0.66 0.818007
Target:  5'- ---cGCUGCUCUacgaCGgCGaGCCGACGc -3'
miRNA:   3'- guuuCGGCGAGAg---GCgGCgCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 31218 0.66 0.818007
Target:  5'- aCGAAG-CGCUCgaacgugUCGCUGUaGCCGAUGa -3'
miRNA:   3'- -GUUUCgGCGAGa------GGCGGCG-CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 75659 0.66 0.818007
Target:  5'- --cAGCgGCgccgUCCGCCGCuacacgcucGCCGACu -3'
miRNA:   3'- guuUCGgCGag--AGGCGGCG---------CGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 120720 0.66 0.818007
Target:  5'- ---cGUCGUUCUUCGUCGUggGCaCGGCGg -3'
miRNA:   3'- guuuCGGCGAGAGGCGGCG--CG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 32 0.66 0.817184
Target:  5'- aCGAGGCCGCcgcgggcUCUCgGaCGaacgGCCGACGc -3'
miRNA:   3'- -GUUUCGGCG-------AGAGgCgGCg---CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 14212 0.66 0.809712
Target:  5'- --uGGCCGCcCcaaCGCCaccCGCCGACGa -3'
miRNA:   3'- guuUCGGCGaGag-GCGGc--GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 68749 0.66 0.809712
Target:  5'- gGAGGCCGaCUgagcCgggCCGCCgggGCGCCgGACGc -3'
miRNA:   3'- gUUUCGGC-GA----Ga--GGCGG---CGCGG-CUGC- -5'
10973 5' -60.3 NC_002794.1 + 62292 0.66 0.809712
Target:  5'- ---uGCUGCcgCUCCGagcCCGCGCgcaGACGg -3'
miRNA:   3'- guuuCGGCGa-GAGGC---GGCGCGg--CUGC- -5'
10973 5' -60.3 NC_002794.1 + 47115 0.66 0.809712
Target:  5'- gGAGGUgGagUUCCGCUGcCGCCGACu -3'
miRNA:   3'- gUUUCGgCgaGAGGCGGC-GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 186618 0.66 0.809712
Target:  5'- --cGGCaGgUCUCCGCCa-GCCGACa -3'
miRNA:   3'- guuUCGgCgAGAGGCGGcgCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 73980 0.66 0.809712
Target:  5'- ---cGCCGCUaCUCCGCUaCGaCGACc -3'
miRNA:   3'- guuuCGGCGA-GAGGCGGcGCgGCUGc -5'
10973 5' -60.3 NC_002794.1 + 47978 0.66 0.809712
Target:  5'- ---cGCCGCgcgCUCCuCCGaC-CCGACGa -3'
miRNA:   3'- guuuCGGCGa--GAGGcGGC-GcGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 32563 0.66 0.809712
Target:  5'- --cAGCCGCggauaGUCGCGCgCGGCGg -3'
miRNA:   3'- guuUCGGCGagaggCGGCGCG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 187743 0.66 0.809712
Target:  5'- gCAccGUCGCcaUCUCCGaaCGcCGCCGGCGc -3'
miRNA:   3'- -GUuuCGGCG--AGAGGCg-GC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 186956 0.66 0.809712
Target:  5'- -cGGGCCGCUggCCGCCGCcuCCaGCa -3'
miRNA:   3'- guUUCGGCGAgaGGCGGCGc-GGcUGc -5'
10973 5' -60.3 NC_002794.1 + 191814 0.66 0.809712
Target:  5'- --cGGCCGCUCgaggaCCGCgaGCucGCuCGACGg -3'
miRNA:   3'- guuUCGGCGAGa----GGCGg-CG--CG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 38683 0.66 0.809712
Target:  5'- ----cCCGCggacggggUCaCCGCCGCGCCGuCGa -3'
miRNA:   3'- guuucGGCG--------AGaGGCGGCGCGGCuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.