miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 96526 0.89 0.041882
Target:  5'- aGGAGCUGCgcCUCUGCCGCGCCGACGa -3'
miRNA:   3'- gUUUCGGCGa-GAGGCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 81328 0.88 0.048922
Target:  5'- -cAAGCCGCgguacgCUCCGCCGuCGCCGACGg -3'
miRNA:   3'- guUUCGGCGa-----GAGGCGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 183648 0.82 0.11334
Target:  5'- gCAGGGCCGCcuUCUCCGCgccgggcccgaGCGCCGACGg -3'
miRNA:   3'- -GUUUCGGCG--AGAGGCGg----------CGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 82657 0.81 0.12519
Target:  5'- ---cGCCGCgCUCgaCGCCGCGCCGGCGg -3'
miRNA:   3'- guuuCGGCGaGAG--GCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 105425 0.81 0.13818
Target:  5'- cCAGGGUgGC-CgCCGCCGCGCCGGCGg -3'
miRNA:   3'- -GUUUCGgCGaGaGGCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 40504 0.79 0.167928
Target:  5'- ---cGCCGCUCgagucacggCCGCCgacGCGCCGACGg -3'
miRNA:   3'- guuuCGGCGAGa--------GGCGG---CGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 21962 0.79 0.176214
Target:  5'- --cGGCCGCUC-CCGCgGCGCCGuCGu -3'
miRNA:   3'- guuUCGGCGAGaGGCGgCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 34034 0.79 0.176214
Target:  5'- cCAGAGCCGC-CUgCUGCCGgGCCGGCc -3'
miRNA:   3'- -GUUUCGGCGaGA-GGCGGCgCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 41243 0.79 0.189325
Target:  5'- ---cGCCGCgg-CCGCCGaCGCCGGCGg -3'
miRNA:   3'- guuuCGGCGagaGGCGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 53749 0.79 0.189325
Target:  5'- ---cGCCGCUgCcgCCGCCGCuGCCGGCGg -3'
miRNA:   3'- guuuCGGCGA-Ga-GGCGGCG-CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 112576 0.78 0.193883
Target:  5'- --cGGCCGCUCUCCaGCUGCGCCagGGCc -3'
miRNA:   3'- guuUCGGCGAGAGG-CGGCGCGG--CUGc -5'
10973 5' -60.3 NC_002794.1 + 181158 0.78 0.198536
Target:  5'- --cAGCC-Cg-UCCGCCGCGCCGACGg -3'
miRNA:   3'- guuUCGGcGagAGGCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 12762 0.78 0.203287
Target:  5'- ---uGCCGCUCUugccgCCGCCGCGCuuCGGCGa -3'
miRNA:   3'- guuuCGGCGAGA-----GGCGGCGCG--GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 189377 0.78 0.213084
Target:  5'- -uGAGCCGCUCgCCGCUGUGCuCGGCc -3'
miRNA:   3'- guUUCGGCGAGaGGCGGCGCG-GCUGc -5'
10973 5' -60.3 NC_002794.1 + 81564 0.78 0.218132
Target:  5'- ---cGCCGC-CgCCGCCGCGCCgGACGa -3'
miRNA:   3'- guuuCGGCGaGaGGCGGCGCGG-CUGC- -5'
10973 5' -60.3 NC_002794.1 + 130667 0.77 0.228537
Target:  5'- --cGGCCGCgggCUCCGCCGCGgccUCGugGg -3'
miRNA:   3'- guuUCGGCGa--GAGGCGGCGC---GGCugC- -5'
10973 5' -60.3 NC_002794.1 + 100304 0.77 0.233895
Target:  5'- ---uGCCGC-CUCCGCCGCuggcacgcgcgGCCGGCGc -3'
miRNA:   3'- guuuCGGCGaGAGGCGGCG-----------CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 110330 0.77 0.239359
Target:  5'- gCGAcGCCGCgcggggggUCUCCGCCGUGgCGACGc -3'
miRNA:   3'- -GUUuCGGCG--------AGAGGCGGCGCgGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 40287 0.77 0.250605
Target:  5'- ---cGCCGCUacgcgUCCGUCGCGCCGAgGa -3'
miRNA:   3'- guuuCGGCGAg----AGGCGGCGCGGCUgC- -5'
10973 5' -60.3 NC_002794.1 + 108204 0.77 0.250605
Target:  5'- ---cGCUGCg--CCGCCGCGCCGGCc -3'
miRNA:   3'- guuuCGGCGagaGGCGGCGCGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.